Needles in fungal haystacks : discovery of a putative a-factor pheromone and a unique mating strategy in the Leotiomycetes

dc.contributor.authorWilson, Andi M.
dc.contributor.authorCoetzee, Martin Petrus Albertus
dc.contributor.authorWingfield, Michael J.
dc.contributor.authorWingfield, Brenda D.
dc.date.accessioned2024-09-19T10:14:17Z
dc.date.available2024-09-19T10:14:17Z
dc.date.issued2023-10-12
dc.descriptionDATA AVAILABILITY STATEMENT : A total of 124 genomes as well as various RNA seq datasets were used for this manuscript. All of this data was downloaded specifically for this manuscript from the NCBI’s Genome and SRA databases. All the relevant accession numbers can be found in S1 Table.en_US
dc.descriptionSUPPORTING INFORMATION : FIGURE S1. Determining the length of the mature repeat in the α-factor pheromone using Hymenoscyphus occultus as an example. FIGURE S2. Comparison between the maximum likelihood tree generated using a concatenated supermatrix of 72 genes and the maximum likelihood supertree generated using the 72 individual gene regions combined using ASTRAL. FIGURE S3. Ancestral state reconstruction of the Leotiomycete mating strategies. FIGURE S4. The diversity of the Leotiomycete a-factor pheromone in the Ploettnerulaceae, Drepanopezizaceae, Mollisiaceae, Erysiphaceae, Hyaloscyphaceae, Helotiaceae and Lachnaceae. FIGURE S5. The conservation of the Sclerotiniaceae and Rutstroemiaceae a-factor pheromones. FIGURE S6. Gene alignments and RNAseq mappings of the ste2 gene from Hymenoscyphus species. TABLE S1. Species included in this study, with NCBI Genome and RNAseq accession numbers. TABLE S2. NCBI accession numbers for the various gene and protein sequences used in BLASTn and tBLASTn analyses. TABLE S3. Presence and absence of both pheromone factors and additional functional information of the α-factor pheromone. TABLE S4. Expression of housekeeping genes, MAT genes, pheromone genes and pheromone receptor genes. FILE S1. Genomes that were excluded from the analyses. FILE S2. A pheromone sequences from a variety of Sordariomycetes & yeasts. FILE S3. CAAX/CpAX proteins (<100aa) from B. cinerea, B. sinoalli, S. sclerotiorum,M. fructicola, R. commune, A. resinae and P. destructans. FILE S4. Character state statistics from the ancestral state reconstruction analyses. FILE S5. MAT1-1-13 sequences from Rhynchosporium species. FILE S6. Species that were classified as “undetermined” with regards to their sexual strategy. FILE S7. Explanations regarding the sexual strategy determinations in species with both MAT1-1- and MAT1-2-associated genes. FILE S8. Alpha pheromone sequences for all Leotiomycetes (GBK). FILE S9. Alpha pheromone sequences for all Leotiomycetes (FASTA). FILE S10. A pheromone sequences for all Leotiomycetes.en_US
dc.description.abstractThe Leotiomycetes is a hugely diverse group of fungi, accommodating a wide variety of important plant and animal pathogens, ericoid mycorrhizal fungi, as well as producers of antibiotics. Despite their importance, the genetics of these fungi remain relatively understudied, particularly as they don’t include model taxa. For example, sexual reproduction and the genetic mechanisms that underly this process are poorly understood in the Leotiomycetes. We exploited publicly available genomic and transcriptomic resources to identify genes of the mating-type locus and pheromone response pathway in an effort to characterize the mating strategies and behaviors of 124 Leotiomycete species. Our analyses identified a putative a-factor mating pheromone in these species. This significant finding represents the first identification of this gene in Pezizomycotina species outside of the Sordariomycetes. A unique mating strategy was also discovered in Lachnellula species that appear to have lost the need for the primary MAT1-1-1 protein. Ancestral state reconstruction enabled the identification of numerous transitions between homothallism and heterothallism in the Leotiomycetes and suggests a heterothallic ancestor for this group. This comprehensive catalog of mating-related genes from such a large group of fungi provides a rich resource from which in-depth, functional studies can be conducted in these economically and ecologically important species.en_US
dc.description.departmentBiochemistry, Genetics and Microbiology (BGM)en_US
dc.description.departmentForestry and Agricultural Biotechnology Institute (FABI)en_US
dc.description.librarianam2024en_US
dc.description.sdgSDG-03:Good heatlh and well-beingen_US
dc.description.sdgSDG-15:Life on landen_US
dc.description.sponsorshipDSI-NRF SARChI chair in Fungal Genomics and DSI-NRF Scarce Skills Postdoctoral Fellowship.en_US
dc.description.urihttps://journals.plos.org/plosone/en_US
dc.identifier.citationWilson, A.M., Coetzee, M.P.A., Wingfield, M.J. & Wingfield, B.D. (2023) Needles in fungal haystacks: Discovery of a putative a-factor pheromone and a unique mating strategy in the Leotiomycetes. PLoS One 18(10): e0292619. https://DOI.org/10.1371/journal.pone.0292619.en_US
dc.identifier.issn1932-6203 (online)
dc.identifier.other10.1371/journal.pone.0292619
dc.identifier.urihttp://hdl.handle.net/2263/98324
dc.language.isoenen_US
dc.publisherPublic Library of Scienceen_US
dc.rights© 2023 Wilson et al. This is an open access article distributed under the terms of the Creative Commons Attribution License.en_US
dc.subjectLeotiomycetesen_US
dc.subjectAntibioticsen_US
dc.subjectModel taxaen_US
dc.subjectGenesen_US
dc.subjectSDG-03: Good health and well-beingen_US
dc.subjectSDG-15: Life on landen_US
dc.titleNeedles in fungal haystacks : discovery of a putative a-factor pheromone and a unique mating strategy in the Leotiomycetesen_US
dc.typeArticleen_US

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