De novo assembly and annotation of the Amblyomma hebraeum tick midgut transcriptome response to Ehrlichia ruminantium infection
dc.contributor.author | Omondi, David | |
dc.contributor.author | Zweygarth, Erich | |
dc.contributor.author | Murungi, Edwin | |
dc.contributor.author | Jongejan, Frans | |
dc.contributor.author | Nijhof, Ard M. | |
dc.date.accessioned | 2024-09-17T12:52:24Z | |
dc.date.available | 2024-09-17T12:52:24Z | |
dc.date.issued | 2023-08-14 | |
dc.description | DATA AVAILABILITY STATEMENT : This Transcriptome Shotgun Assembly project has been deposited at DDBJ/EMBL/GenBank under the accession GKMT00000000. The version described in this paper is the first version, GKMT01000000.The A. hebraeum midgut sequence read data used to generate the assembly are found under BioSample accession SAMN31835662. | en_US |
dc.description | SUPPORTING INFORMATION : TABLE S1. Tables of primers used for quantitative PCR (qPCR). TABLE S2. Tables of de novo assembly statistics, alignment and functional annotations of A. hebraeum unigenes. FIGURE S1. Fig of Gene Ontology and Cluster of Orthologous groups of A. hebraeum unigenes. DATA S1. Data on DEGs of five comparison groups of E. ruminantium infected A.hebraeum midguts compared to controls. DATA S2. Data of complete RNA-seq data validation using qPCR. | en_US |
dc.description.abstract | The South African bont tick Amblyomma hebraeum is a hematophagous vector for the heartwater disease pathogen Ehrlichia ruminantium in southern Africa. During feeding, the tick’s enterocytes express proteins that perform vital functions in blood digestion, including proteins that may be involved in E. ruminantium acquisition, colonization or immunity. To delineate the molecular mechanism of midgut response to E. ruminantium infection, we performed comparative analyses of midgut transcriptomes of E. ruminantium infected engorged A. hebraeum nymphs, and infected adult male and female ticks with their corresponding matched uninfected controls, before and during feeding. A total of 102,036 unigenes were annotated in public databases and their expression levels analyzed for engorged nymphs as well as unfed and partly-fed adult ticks. There were 2,025 differentially expressed genes (DEGs) in midguts, of which 1,225 unigenes were up-regulated and 800 unigenes were down-regulated in the midguts of infected ticks. Annotation of DEGs revealed an increase in metabolic and cellular processes among E. ruminantium infected ticks. Notably, among the infected ticks, there was up-regulation in the expression of genes involved in tick immunity, histone proteins and oxidative stress responses. We also observed up-regulation of glycoproteins that E. ruminantium could potentially use as docking sites for host cell entry. Insights uncovered in this study offer a platform for further investigations into the molecular interaction between E. ruminantium and A. hebraeum. | en_US |
dc.description.department | Veterinary Tropical Diseases | en_US |
dc.description.librarian | am2024 | en_US |
dc.description.sdg | SDG-03:Good heatlh and well-being | en_US |
dc.description.sdg | SDG-15:Life on land | en_US |
dc.description.sponsorship | The Alexander von Humboldt Foundation and the German Federal Ministry of Education and Research. | en_US |
dc.description.uri | https://journals.plos.org/plosntds/ | en_US |
dc.identifier.citation | Omondi, D., Zweygarth, E., Murungi, E., Jongejan, F. & Nijhof, A.M. (2023) De novo assembly and annotation of the Amblyomma hebraeum tick midgut transcriptome response to Ehrlichia ruminantium infection. PLoS Neglected Tropical Diseases 17(8): e0011554. https://DOI.org/10.1371/journal.pntd.0011554. | en_US |
dc.identifier.issn | 1935-2727 (print) | |
dc.identifier.issn | 1935-2735 (online) | |
dc.identifier.other | 10.1371/journal.pntd.0011554 | |
dc.identifier.uri | http://hdl.handle.net/2263/98281 | |
dc.language.iso | en | en_US |
dc.publisher | Public Library of Science | en_US |
dc.rights | © 2023 Omondi et al. This is an open access article distributed under the terms of the Creative Commons Attribution License. | en_US |
dc.subject | Ehrlichia ruminantium | en_US |
dc.subject | Amblyomma hebraeum | en_US |
dc.subject | Ticks | en_US |
dc.subject | Bont tick (Amblyomma hebraeum) | en_US |
dc.subject | Differentially expressed gene (DEG) | en_US |
dc.subject | SDG-03: Good health and well-being | en_US |
dc.subject | SDG-15: Life on land | en_US |
dc.title | De novo assembly and annotation of the Amblyomma hebraeum tick midgut transcriptome response to Ehrlichia ruminantium infection | en_US |
dc.type | Article | en_US |
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