De novo assembly and annotation of the Amblyomma hebraeum tick midgut transcriptome response to Ehrlichia ruminantium infection
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Date
Authors
Omondi, David
Zweygarth, Erich
Murungi, Edwin
Jongejan, Frans
Nijhof, Ard M.
Journal Title
Journal ISSN
Volume Title
Publisher
Public Library of Science
Abstract
The South African bont tick Amblyomma hebraeum is a hematophagous vector for the
heartwater disease pathogen Ehrlichia ruminantium in southern Africa. During feeding, the
tick’s enterocytes express proteins that perform vital functions in blood digestion, including
proteins that may be involved in E. ruminantium acquisition, colonization or immunity. To
delineate the molecular mechanism of midgut response to E. ruminantium infection, we performed
comparative analyses of midgut transcriptomes of E. ruminantium infected
engorged A. hebraeum nymphs, and infected adult male and female ticks with their corresponding
matched uninfected controls, before and during feeding. A total of 102,036 unigenes
were annotated in public databases and their expression levels analyzed for
engorged nymphs as well as unfed and partly-fed adult ticks. There were 2,025 differentially
expressed genes (DEGs) in midguts, of which 1,225 unigenes were up-regulated and 800
unigenes were down-regulated in the midguts of infected ticks. Annotation of DEGs
revealed an increase in metabolic and cellular processes among E. ruminantium infected
ticks. Notably, among the infected ticks, there was up-regulation in the expression of genes
involved in tick immunity, histone proteins and oxidative stress responses. We also
observed up-regulation of glycoproteins that E. ruminantium could potentially use as docking
sites for host cell entry. Insights uncovered in this study offer a platform for further investigations
into the molecular interaction between E. ruminantium and A. hebraeum.
Description
DATA AVAILABILITY STATEMENT : This Transcriptome
Shotgun Assembly project has been deposited at
DDBJ/EMBL/GenBank under the accession
GKMT00000000. The version described in this
paper is the first version, GKMT01000000.The A.
hebraeum midgut sequence read data used to
generate the assembly are found under BioSample
accession SAMN31835662.
SUPPORTING INFORMATION : TABLE S1. Tables of primers used for quantitative PCR (qPCR). TABLE S2. Tables of de novo assembly statistics, alignment and functional annotations of A. hebraeum unigenes. FIGURE S1. Fig of Gene Ontology and Cluster of Orthologous groups of A. hebraeum unigenes. DATA S1. Data on DEGs of five comparison groups of E. ruminantium infected A.hebraeum midguts compared to controls. DATA S2. Data of complete RNA-seq data validation using qPCR.
SUPPORTING INFORMATION : TABLE S1. Tables of primers used for quantitative PCR (qPCR). TABLE S2. Tables of de novo assembly statistics, alignment and functional annotations of A. hebraeum unigenes. FIGURE S1. Fig of Gene Ontology and Cluster of Orthologous groups of A. hebraeum unigenes. DATA S1. Data on DEGs of five comparison groups of E. ruminantium infected A.hebraeum midguts compared to controls. DATA S2. Data of complete RNA-seq data validation using qPCR.
Keywords
Ehrlichia ruminantium, Amblyomma hebraeum, Ticks, Bont tick (Amblyomma hebraeum), Differentially expressed gene (DEG), SDG-03: Good health and well-being, SDG-15: Life on land
Sustainable Development Goals
SDG-03:Good heatlh and well-being
SDG-15:Life on land
SDG-15:Life on land
Citation
Omondi, D., Zweygarth, E., Murungi, E., Jongejan, F. & Nijhof, A.M. (2023) De novo assembly and annotation of the Amblyomma hebraeum tick
midgut transcriptome response to Ehrlichia
ruminantium infection. PLoS Neglected Tropical Diseases 17(8):
e0011554. https://DOI.org/10.1371/journal.pntd.0011554.