Genomic analysis of a multidrug-resistant clinical Providencia rettgeri (PR002) strain with the novel integron ln1483 and an A/C plasmid replicon
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| dc.contributor.author | Mbelle, Nontombi Marylucy
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| dc.contributor.author | Osei Sekyere, John
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| dc.contributor.author | Amoako, Daniel Gyamfi
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| dc.contributor.author | Maningi, Nontuthuko Excellent
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| dc.contributor.author | Modipane, Lesedi
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| dc.contributor.author | Essack, Sabiha Yusuf
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| dc.contributor.author | Feldman, Charles
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| dc.date.accessioned | 2021-08-03T06:41:35Z | |
| dc.date.available | 2021-08-03T06:41:35Z | |
| dc.date.issued | 2020-02 | |
| dc.description | Supplementary material: Figure S1. Prophages of P. rettgeri PR002 were identified using the PHAge Search Tool (PHAST). PR002 contained four intact prophages (red color), one incomplete prophage (gray color), and one questionable prophage (green color). | en_ZA |
| dc.description | Supplementary tables: Table S1. Metadata (biosample data) of all sequenced P. rettgeri isolates from NCBI GenBank database Table S2. Genes associated with general COG functional categories in the genome of P. rettgeri PR002. Table S3. Pathogenicity islands (PAIs) predicted for PR002 from VFDB (http://www.paidb.re.kr/about_paidb.php). Table S5. Diversity of metal resistance gene determinants found in PR002 genome. | en_ZA |
| dc.description | File S1. Metadata of isolates used in phylogenomics. | en_ZA |
| dc.description.abstract | Please read abstract in the article. | en_ZA |
| dc.description.department | Medical Microbiology | en_ZA |
| dc.description.librarian | hj2021 | en_ZA |
| dc.description.sponsorship | The National Health Laboratory Services of South Africa | en_ZA |
| dc.description.uri | https://nyaspubs.onlinelibrary.wiley.com/journal/17496632 | en_ZA |
| dc.identifier.citation | Mbelle, N.M., Osei Sekyere, J., Amoako, D.G. et al. 2020, 'Genomic analysis of a multidrug-resistant clinical Providencia rettgeri (PR002) strain with the novel integron ln1483 and an A/C plasmid replicon', Annals of the New York Academy of Sciences, vol. 1462, no. 1, pp. 92-103. | en_ZA |
| dc.identifier.issn | 0077-8923 (print) | |
| dc.identifier.issn | 1749-6632 (online) | |
| dc.identifier.other | 10.1111/nyas.14237 | |
| dc.identifier.uri | http://hdl.handle.net/2263/81097 | |
| dc.language.iso | en | en_ZA |
| dc.publisher | Wiley | en_ZA |
| dc.rights | © 2020 New York Academy of Sciences. This is the pre-peer reviewed version of the following article : 'Genomic analysis of a multidrug-resistant clinical Providencia rettgeri (PR002) strain with the novel integron ln1483 and an A/C plasmid replicon', Annals of the New York Academy of Sciences, vol. 1462, no. 1, pp. 92-103, 2020, doi : 10.1111/nyas.14237. The definite version is available at : https://nyaspubs.onlinelibrary.wiley.co m/journal/17496632. | en_ZA |
| dc.subject | Providencia rettgeri | en_ZA |
| dc.subject | IncA/C2 plasmid | en_ZA |
| dc.subject | Resistome | en_ZA |
| dc.subject | Mobilome | en_ZA |
| dc.subject | Virulence | en_ZA |
| dc.subject | South Africa (SA) | en_ZA |
| dc.title | Genomic analysis of a multidrug-resistant clinical Providencia rettgeri (PR002) strain with the novel integron ln1483 and an A/C plasmid replicon | en_ZA |
| dc.type | Postprint Article | en_ZA |
