Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi : Ascomycota) from Protea trees in South Africa

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dc.contributor.author Aylward, Janneke
dc.contributor.author Steenkamp, Emma Theodora
dc.contributor.author Dreyer, L.L. (Leanne Laurette)
dc.contributor.author Roets, Francois
dc.contributor.author Wingfield, Brenda D.
dc.contributor.author Wingfield, Michael J.
dc.date.accessioned 2016-07-20T05:34:54Z
dc.date.available 2016-07-20T05:34:54Z
dc.date.issued 2016-02-29
dc.description Additional file 1: Table S1. Associated MIGS record for K. capensis. en_ZA
dc.description Additional file 2: Table S2. Associated MIGS record for K. proteae. en_ZA
dc.description Additional file 3: Table S3. Sequenced Sordariomycete fungi used as evidence for genome annotations. en_ZA
dc.description.abstract Two closely related ophiostomatoid fungi, Knoxdaviesia capensis and K. proteae, inhabit the fruiting structures of certain Protea species indigenous to southern Africa. Although K. capensis occurs in several Protea hosts, K. proteae is confined to P. repens. In this study, the genomes of K. capensis CBS139037 and K. proteae CBS140089 are determined. The genome of K. capensis consists of 35,537,816 bp assembled into 29 scaffolds and 7940 predicted protein-coding genes of which 6192 (77.98 %) could be functionally classified. K. proteae has a similar genome size of 35,489,142 bp that is comprised of 133 scaffolds. A total of 8173 protein-coding genes were predicted for K. proteae and 6093 (74.55 %) of these have functional annotations. The GC-content of both genomes is 52.8 %. en_ZA
dc.description.department Genetics en_ZA
dc.description.department Microbiology and Plant Pathology en_ZA
dc.description.librarian am2016 en_ZA
dc.description.sponsorship The National Research Foundation (NRF) and the Department of Science and Technology/NRF Centre of Excellence in Tree Health Biotechnology. en_ZA
dc.description.uri http://www.sherpa.ac.uk/romeo/issn/1944-3277/ en_ZA
dc.identifier.citation Aylward, J, Steenkamp, ET, Dreyer, LL, Roets, F, Wingfield, BD & Wingfield, MJ 2016, 'Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi : Ascomycota) from Protea trees in South Africa', Standards in Genomic Sciences, vol. 11, art. #22, pp. 1-7. en_ZA
dc.identifier.issn 1944-3277
dc.identifier.other 10.1186/s40793-016-0139-9
dc.identifier.uri http://hdl.handle.net/2263/55981
dc.language.iso en en_ZA
dc.publisher BioMed Central en_ZA
dc.rights © 2016 Aylward et al. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License. en_ZA
dc.subject Knoxdaviesia en_ZA
dc.subject Gondwanamycetaceae en_ZA
dc.subject Microascales en_ZA
dc.subject Ophiostomatoid fungi en_ZA
dc.subject Protea en_ZA
dc.title Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi : Ascomycota) from Protea trees in South Africa en_ZA
dc.type Article en_ZA


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