Worldwide diversity of endophytic fungi and insects associated with dormant tree twigs

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dc.contributor.author Franic, Iva
dc.contributor.author Prospero, Simone
dc.contributor.author Adamson, Kalev
dc.contributor.author Allan, Eric
dc.contributor.author Attorre, Fabio
dc.contributor.author Auger-Rozenberg, Marie Anne
dc.contributor.author Augustin, Sylvie
dc.contributor.author Avtzis, Dimitrios
dc.contributor.author Baert, Wim
dc.contributor.author Barta, Marek
dc.contributor.author Bauters, Kenneth
dc.contributor.author Bellahirech, Amani
dc.contributor.author Boron, Piotr
dc.contributor.author Braganca, Helena
dc.contributor.author Brestovansk, Tereza
dc.contributor.author Brurberg, May Bente
dc.contributor.author Burgess, Treena I.
dc.contributor.author Burokiene, Daiva
dc.contributor.author Cleary, Michelle
dc.contributor.author Corley, Juan
dc.contributor.author Coyle, David R .
dc.contributor.author Csoka, Gyorgy
dc.contributor.author Cerny, Karel
dc.contributor.author Davydenko, Kateryna
dc.contributor.author De Groot, Maarten
dc.contributor.author Diez, Julio Javier
dc.contributor.author Lehtijärvi, H. Tugba Dogmus
dc.contributor.author Drenkhan, Rein
dc.contributor.author Edwards, Jacqueline
dc.contributor.author Elsafy, Mohammed
dc.contributor.author Eotvos, Csaba Bela
dc.contributor.author Falko, Roman
dc.contributor.author Fan, Jianting
dc.contributor.author Feddern, Nina
dc.contributor.author Furjes-Miko, Agnes
dc.contributor.author Gossner, Martin M.
dc.contributor.author Grad, Bartłomiej
dc.contributor.author Hartmann, Martin
dc.contributor.author Havrdova, Ludmila
dc.contributor.author Horakova, Miriam Kadasi
dc.contributor.author Hrabetova, Marketa
dc.contributor.author Justesen, Mathias Just
dc.contributor.author Kacprzyk, Magdalena
dc.contributor.author Kenis, Marc
dc.contributor.author Kirichenko, Natalia
dc.contributor.author Kovac, Marta
dc.contributor.author Kramarets, Volodymyr
dc.contributor.author Lackovic, Nikola
dc.contributor.author Lantschner, Maria Victoria
dc.contributor.author Lazarevic, Jelena
dc.contributor.author Leskiv, Marianna
dc.contributor.author Li, Hongmei
dc.contributor.author Madsen, Corrie Lynne
dc.contributor.author Malumphy, Chris
dc.contributor.author Matosevic, Dinka
dc.contributor.author Matsiakh, Iryna
dc.contributor.author May, Tom W.
dc.contributor.author Meffert, Johan
dc.contributor.author Migliorini, Duccio
dc.contributor.author Nikolov, Christo
dc.contributor.author O ’Hanlon, Richard
dc.contributor.author Oskay, Funda
dc.contributor.author Paap, Trudy
dc.contributor.author Parpan, Taras
dc.contributor.author Piskur, Barbara
dc.contributor.author Ravn, Hans P eter
dc.contributor.author Richard, John
dc.contributor.author Ronse, Anne
dc.contributor.author Roques, Alain
dc.contributor.author Ruffner, Beat
dc.contributor.author Sivickis, Karolis
dc.contributor.author Soliani, Carolina
dc.contributor.author Talgo, Venche
dc.contributor.author Tomoshevich, Maria
dc.contributor.author Uimari, Anne
dc.contributor.author Ulyshen, Michael
dc.contributor.author Vettraino, Anna Maria
dc.contributor.author Villari, Caterina
dc.contributor.author Wang, Yongjun
dc.contributor.author Witzell, Johanna
dc.contributor.author Zlatkovic, Milica
dc.contributor.author Eschen, Rene
dc.date.accessioned 2023-11-08T12:59:50Z
dc.date.available 2023-11-08T12:59:50Z
dc.date.issued 2022-03-01
dc.description Code availability R functions and databases used for generating the sample metadata are specified in the method section. A customized pipeline used for quality filtering of the raw sequence data obtained from HTS, delineation into ASVs and taxonomic classification of ASVs as described in Herzog et al.30 is available as a “ITS2.bash” file from the Zenodo repository28. en_US
dc.description.abstract International trade in plants and climate change are two of the main factors causing damaging tree pests (i.e. fungi and insects) to spread into new areas. To mitigate these risks, a large-scale assessment of tree-associated fungi and insects is needed. We present records of endophytic fungi and insects in twigs of 17 angiosperm and gymnosperm genera, from 51 locations in 32 countries worldwide. Endophytic fungi were characterized by highthroughput sequencing of 352 samples from 145 tree species in 28 countries. Insects were reared from 227 samples of 109 tree species in 18 countries and sorted into taxonomic orders and feeding guilds. Herbivorous insects were grouped into morphospecies and were identified using molecular and morphological approaches. This dataset reveals the diversity of tree-associated taxa, as it contains 12,721 fungal Amplicon Sequence Variants and 208 herbivorous insect morphospecies, sampled across broad geographic and climatic gradients and for many tree species. This dataset will facilitate applied and fundamental studies on the distribution of fungal endophytes and insects in trees. en_US
dc.description.department Forestry and Agricultural Biotechnology Institute (FABI) en_US
dc.description.librarian am2023 en_US
dc.description.sponsorship The Swiss National Science Foundation (Project C15.0081) grant number 174644 and the Swiss Federal Office for the Environment (Grant 00.0418.PZ/ P193- 1077). This work was supported by COST Action “Global Warning” (FP1401). CABI is an international intergovernmental organisation, and R.E., M.K., H.L. and I.F. gratefully acknowledge the core financial support from our member countries (and lead agencies) including the United Kingdom (Foreign, Commonwealth & Development Office), China (Chinese Ministry of Agriculture and Rural Affairs), Australia (Australian Centre for International Agricultural Research), Canada (Agriculture and Agri-Food Canada), Netherlands (Directorate General for International Cooperation), and Switzerland (Swiss Agency for Development and Cooperation). See https://www.cabi.org/aboutcabi/who-we-work-with/key-donors/ for full details. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. M.B. and M.K.H. were financially supported by the Slovak Research and Development Agency (Project APVV-19-0116). H.B. would like to thank the botanist Jorge Capelo who helped with Myrtaceae identification and INIAV IP for supporting her contribution to this study. Contributions of M. de G. and B.P. were financed through Slovenian Research Agency (P4-0107) and by the Slovenian Ministry of Agriculture, Forestry and Food (Public Forestry Service). G.C, C.B.E. and A.F.M. were supported by OTKA 128008 research grant provided by the National Research, Development and Innovation Office. Contributions of K.A. and R.D. were supported by the Estonian Science Foundation grant PSG136. M.J.J., C.L.M. and H.P.R. were financially supported by the 15. Juni Fonden (Grant 2017-N-123). P.B., B.G. and M.Ka. were financially supported by the Ministry of Science and Higher Education of the Republic of Poland for the University of Agriculture in Krakow (SUB/040013-D019). C.N. was financially supported by the Slovak Research and Development Agency (Grant APVV-15-0531). N.K. was partially supported by Russian Foundation for Basic Research (Grants 15-29-02645, 19-04-01029). R.OH. was supported by funding from DAERA, and assistance from David Craig, AFBI. T.P. thanks the South African Department of Forestry, Fisheries and the Environment (DFFE) for funding noting that this publication does not necessarily represent the views or opinions of DFFE or its employees. In preparing the publication, materials of the bioresource scientific collection of the CSBG SB RAS “Collections of living plants indoors and outdoors” USU_440534 (Novosibirsk, Russia) were used. M.Z. was financially supported by Ministry of education, science and technological development of the Republic of Serbia (Contract 451-03-68/2020-14/200197). We acknowledge the Genetic Diversity Centre (GDC) at ETH Zurich for providing computational infrastructure and acknowledge the contribution of McGill University and Génome Québec Innovation Center (Montréal, Quebec, Canada) for pair-end sequencing on Illumina MiSeq. en_US
dc.description.uri http://www.nature.com/scientificdata en_US
dc.identifier.citation Franic, I., Prospero, S., Adamson, K. et al. 2022, 'Worldwide diversity of endophytic fungi and insects associated with dormant tree twigs', Scientific Data, vol. 9, no. 62, pp. 1-9. https://DOI.org/10.1038/s41597-022-01162-3. en_US
dc.identifier.issn 2052-4463
dc.identifier.other 10.1038/s41597-022-01162-3
dc.identifier.uri http://hdl.handle.net/2263/93210
dc.language.iso en en_US
dc.publisher Nature Research en_US
dc.rights © The Author(s) 2022. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License. en_US
dc.subject Insects en_US
dc.subject Trees en_US
dc.subject Plants en_US
dc.subject Climate change en_US
dc.subject SDG-15: Life on land en_US
dc.title Worldwide diversity of endophytic fungi and insects associated with dormant tree twigs en_US
dc.type Article en_US


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