Integration of genomic and proteomic analyses in the classification of the Siphoviridae family
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| dc.contributor.author | Adriaenssens, Evelien M.
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| dc.contributor.author | Edwards, Robert P.
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| dc.contributor.author | Nash, John H.E.
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| dc.contributor.author | Mahadevan, Padmanabhan
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| dc.contributor.author | Seto, Donald
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| dc.contributor.author | Ackermann, Hans-Wolfgang
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| dc.contributor.author | Lavigne, Rob
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| dc.contributor.author | Kropinski, Andrew M.
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| dc.date.accessioned | 2015-12-08T10:14:20Z | |
| dc.date.issued | 2015-03 | |
| dc.description.abstract | Using a variety of genomic (BLASTN, ClustalW) and proteomic (Phage Proteomic Tree, CoreGenes) tools we have tackled the taxonomic status of members of the largest bacteriophage family, the Siphoviridae. In all over 400 phages were examined and we were able to propose 39 new genera, comprising 216 phage species, and add 62 species to two previously defined genera (Phic3unalikevirus; L5likevirus) grouping, in total, 390 fully sequenced phage isolates. Many of the remainder are orphans which the Bacterial and Archaeal Viruses Subcommittee of the International Committee on Taxonomy of Viruses (ICTV) chooses not to ascribe genus status at the time being. | en_ZA |
| dc.description.embargo | 2016-03-31 | |
| dc.description.librarian | hb2015 | en_ZA |
| dc.description.uri | http://www.elsevier.com/locate/yviro | en_ZA |
| dc.identifier.citation | Adriaenssens, EM, Edwards, R, Nash, JHE, Mahadevan, P, Seto, D, Ackermann, HW, Lavigne, R & Kropinski, AM 2015, 'Integration of genomic and proteomic analyses in the classification of the Siphoviridae family', Virology, vol. 477, pp. 144-154. | en_ZA |
| dc.identifier.issn | 0042-6822 (print) | |
| dc.identifier.issn | 1096-0341 (online) | |
| dc.identifier.other | 10.1016/j.virol.2014.10.016 | |
| dc.identifier.uri | http://hdl.handle.net/2263/51132 | |
| dc.language.iso | en | en_ZA |
| dc.publisher | Elsevier | en_ZA |
| dc.rights | © 2014 Elsevier Inc. All rights reserved. Notice : this is the author’s version of a work that was accepted for publication in Virology. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. A definitive version was subsequently published in Virology, vol. 477, pp. 144-154, 2015. doi : 10.1016/j.virol.2014.10.016. | en_ZA |
| dc.subject | Siphoviridae | en_ZA |
| dc.subject | Taxonomy | en_ZA |
| dc.subject | Phage ProteomicTree | en_ZA |
| dc.subject | CoreGenes | en_ZA |
| dc.subject | ClustalW | en_ZA |
| dc.subject | International Committee on Taxonomy of Viruses (ICTV) | en_ZA |
| dc.title | Integration of genomic and proteomic analyses in the classification of the Siphoviridae family | en_ZA |
| dc.type | Postprint Article | en_ZA |
