Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix (Xylariaceae: Xylariales)
dc.contributor.author | Van der Nest, Magrieta Aletta | |
dc.contributor.author | Steenkamp, Emma Theodora | |
dc.contributor.author | De Vos, Lieschen | |
dc.contributor.author | Wienk, Raven | |
dc.contributor.author | Swart, Velushka | |
dc.contributor.author | Van den Berg, Noelani | |
dc.date.accessioned | 2025-02-17T11:54:29Z | |
dc.date.available | 2025-02-17T11:54:29Z | |
dc.date.issued | 2024 | |
dc.description | DATA AVAILABILITY STATEMENT : The genome sequence data that support the findings of this study are openly available in GenBank of NCBI at https://www.ncbi.nlm.nih.gov/. The associated BioProject, BioSample, Genbank, and SRA numbers are PRJNA884201, SAMN31015769, PP377641 and SRR28283158. | en_US |
dc.description.abstract | The mitochondrial genome of Dematophora necatrix is 121,350 base pairs in length with a GþC content of 30.19%. Phylogenetic analysis showed that D. necatrix grouped with other members of the Xylariaceae, with which its mitogenome also shares a broadly similar architecture and gene content. The D. necatrix mitogenome contains 14 protein-coding and 26 tRNA-encoding genes, as well as one copy each of the rnl, rns, rps3 and nat1 genes. However, as much as 80% of this genome is intronic or non-coding. This is likely due to expansions and rearrangements caused by the large number of group I introns and the homing endonucleases and reverse-transcriptases they encode. Our study thus provides a valuable foundation from which to explore the mitochondrion’s role in the biology of D. necatrix, and also serves as a resource for investigating the pathogen’s population biology and general ecology. | en_US |
dc.description.department | Biochemistry, Genetics and Microbiology (BGM) | en_US |
dc.description.department | Forestry and Agricultural Biotechnology Institute (FABI) | en_US |
dc.description.librarian | am2024 | en_US |
dc.description.sdg | SDG-15:Life on land | en_US |
dc.description.sponsorship | The Hans Merensky Foundation. | en_US |
dc.description.uri | https://www.tandfonline.com/loi/tmdn20 | en_US |
dc.identifier.citation | Van der Nest, M.A., Steenkamp, E.T., De Vos, L. et al. 2024, 'Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix Xylariaceae: Xylariales)', Mitochondrial DNA Part B Resources, vol. 9, no. 9, 1207-1212. https://DOI.org/10.1080/23802359.2024.2403411. | en_US |
dc.identifier.issn | 2380-2359 | |
dc.identifier.other | 10.1080/23802359.2024.2403411 | |
dc.identifier.uri | http://hdl.handle.net/2263/100988 | |
dc.language.iso | en | en_US |
dc.publisher | Taylor and Francis Group | en_US |
dc.rights | © 2024 The Author(s). This is an Open Access article distributed under the terms of the Creative Commons Attribution License. | en_US |
dc.subject | tRNA gene clusters | en_US |
dc.subject | Homing endonucleases | en_US |
dc.subject | Nacetyltransferase | en_US |
dc.subject | Xylariaceae | en_US |
dc.subject | SDG-15: Life on land | en_US |
dc.title | Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix (Xylariaceae: Xylariales) | en_US |
dc.type | Article | en_US |
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