Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix (Xylariaceae: Xylariales)

dc.contributor.authorVan der Nest, Magrieta Aletta
dc.contributor.authorSteenkamp, Emma Theodora
dc.contributor.authorDe Vos, Lieschen
dc.contributor.authorWienk, Raven
dc.contributor.authorSwart, Velushka
dc.contributor.authorVan den Berg, Noelani
dc.date.accessioned2025-02-17T11:54:29Z
dc.date.available2025-02-17T11:54:29Z
dc.date.issued2024
dc.descriptionDATA AVAILABILITY STATEMENT : The genome sequence data that support the findings of this study are openly available in GenBank of NCBI at https://www.ncbi.nlm.nih.gov/. The associated BioProject, BioSample, Genbank, and SRA numbers are PRJNA884201, SAMN31015769, PP377641 and SRR28283158.en_US
dc.description.abstractThe mitochondrial genome of Dematophora necatrix is 121,350 base pairs in length with a GþC content of 30.19%. Phylogenetic analysis showed that D. necatrix grouped with other members of the Xylariaceae, with which its mitogenome also shares a broadly similar architecture and gene content. The D. necatrix mitogenome contains 14 protein-coding and 26 tRNA-encoding genes, as well as one copy each of the rnl, rns, rps3 and nat1 genes. However, as much as 80% of this genome is intronic or non-coding. This is likely due to expansions and rearrangements caused by the large number of group I introns and the homing endonucleases and reverse-transcriptases they encode. Our study thus provides a valuable foundation from which to explore the mitochondrion’s role in the biology of D. necatrix, and also serves as a resource for investigating the pathogen’s population biology and general ecology.en_US
dc.description.departmentBiochemistry, Genetics and Microbiology (BGM)en_US
dc.description.departmentForestry and Agricultural Biotechnology Institute (FABI)en_US
dc.description.librarianam2024en_US
dc.description.sdgSDG-15:Life on landen_US
dc.description.sponsorshipThe Hans Merensky Foundation.en_US
dc.description.urihttps://www.tandfonline.com/loi/tmdn20en_US
dc.identifier.citationVan der Nest, M.A., Steenkamp, E.T., De Vos, L. et al. 2024, 'Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix Xylariaceae: Xylariales)', Mitochondrial DNA Part B Resources, vol. 9, no. 9, 1207-1212. https://DOI.org/10.1080/23802359.2024.2403411.en_US
dc.identifier.issn2380-2359
dc.identifier.other10.1080/23802359.2024.2403411
dc.identifier.urihttp://hdl.handle.net/2263/100988
dc.language.isoenen_US
dc.publisherTaylor and Francis Groupen_US
dc.rights© 2024 The Author(s). This is an Open Access article distributed under the terms of the Creative Commons Attribution License.en_US
dc.subjecttRNA gene clustersen_US
dc.subjectHoming endonucleasesen_US
dc.subjectNacetyltransferaseen_US
dc.subjectXylariaceaeen_US
dc.subjectSDG-15: Life on landen_US
dc.titleComplete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix (Xylariaceae: Xylariales)en_US
dc.typeArticleen_US

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