Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix (Xylariaceae: Xylariales)

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Authors

Van der Nest, Magrieta Aletta
Steenkamp, Emma Theodora
De Vos, Lieschen
Wienk, Raven
Swart, Velushka
Van den Berg, Noelani

Journal Title

Journal ISSN

Volume Title

Publisher

Taylor and Francis Group

Abstract

The mitochondrial genome of Dematophora necatrix is 121,350 base pairs in length with a GþC content of 30.19%. Phylogenetic analysis showed that D. necatrix grouped with other members of the Xylariaceae, with which its mitogenome also shares a broadly similar architecture and gene content. The D. necatrix mitogenome contains 14 protein-coding and 26 tRNA-encoding genes, as well as one copy each of the rnl, rns, rps3 and nat1 genes. However, as much as 80% of this genome is intronic or non-coding. This is likely due to expansions and rearrangements caused by the large number of group I introns and the homing endonucleases and reverse-transcriptases they encode. Our study thus provides a valuable foundation from which to explore the mitochondrion’s role in the biology of D. necatrix, and also serves as a resource for investigating the pathogen’s population biology and general ecology.

Description

DATA AVAILABILITY STATEMENT : The genome sequence data that support the findings of this study are openly available in GenBank of NCBI at https://www.ncbi.nlm.nih.gov/. The associated BioProject, BioSample, Genbank, and SRA numbers are PRJNA884201, SAMN31015769, PP377641 and SRR28283158.

Keywords

tRNA gene clusters, Homing endonucleases, Nacetyltransferase, Xylariaceae, SDG-15: Life on land

Sustainable Development Goals

SDG-15:Life on land

Citation

Van der Nest, M.A., Steenkamp, E.T., De Vos, L. et al. 2024, 'Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix Xylariaceae: Xylariales)', Mitochondrial DNA Part B Resources, vol. 9, no. 9, 1207-1212. https://DOI.org/10.1080/23802359.2024.2403411.