Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix (Xylariaceae: Xylariales)
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Date
Authors
Van der Nest, Magrieta Aletta
Steenkamp, Emma Theodora
De Vos, Lieschen
Wienk, Raven
Swart, Velushka
Van den Berg, Noelani
Journal Title
Journal ISSN
Volume Title
Publisher
Taylor and Francis Group
Abstract
The mitochondrial genome of Dematophora necatrix is 121,350 base pairs in length with a GþC content
of 30.19%. Phylogenetic analysis showed that D. necatrix grouped with other members of the
Xylariaceae, with which its mitogenome also shares a broadly similar architecture and gene content.
The D. necatrix mitogenome contains 14 protein-coding and 26 tRNA-encoding genes, as well as one
copy each of the rnl, rns, rps3 and nat1 genes. However, as much as 80% of this genome is intronic or
non-coding. This is likely due to expansions and rearrangements caused by the large number of group
I introns and the homing endonucleases and reverse-transcriptases they encode. Our study thus provides
a valuable foundation from which to explore the mitochondrion’s role in the biology of D. necatrix,
and also serves as a resource for investigating the pathogen’s population biology and general
ecology.
Description
DATA AVAILABILITY STATEMENT : The genome sequence data that support the findings of this study are openly available in GenBank of NCBI at https://www.ncbi.nlm.nih.gov/. The associated BioProject, BioSample, Genbank, and SRA numbers are PRJNA884201, SAMN31015769, PP377641 and SRR28283158.
Keywords
tRNA gene clusters, Homing endonucleases, Nacetyltransferase, Xylariaceae, SDG-15: Life on land
Sustainable Development Goals
SDG-15:Life on land
Citation
Van der Nest, M.A., Steenkamp, E.T., De Vos, L. et al. 2024, 'Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix
Xylariaceae: Xylariales)', Mitochondrial DNA Part B
Resources, vol. 9, no. 9, 1207-1212. https://DOI.org/10.1080/23802359.2024.2403411.
