Browsing Workspace (UPSpace) by Author "Van Braekel, Julien"

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Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Bogaerts, Bert; Winand, Raf; Van Braekel, Julien; Hoffman, Stefan; Roosens, Nancy H.C.; De Keersmaecker, Sigrid C. J.; Marchal, Kathleen; Vanneste, Kevin (Public Library of Science, 2021-11-05)

Whole genome sequencing (WGS) has become the reference standard for bacterial outbreak investigation and pathogen typing, providing a resolution unattainable with conventional molecular methods. Data generated with Illumina ...
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Bogaerts, Bert; Nouws, Stephanie; Verhaegen, Bavo; Denayer, Sarah; Van Braekel, Julien; Winand, Raf; Fu, Qiang; Crombe, Florence; Pierard, Denis; Marchal, Kathleen; Roosens, Nancy H.C.; De Keersmaecker, Sigrid C. J.; Vanneste, Kevin (Microbiology Society, 2021-03-03)

Whole genome sequencing (WGS) enables complete characterization of bacterial pathogenic isolates at single nucleotide resolution, making it the ultimate tool for routine surveillance and outbreak investigation. The lack ...

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