Browsing Research Articles (Genetics) by Title

Browsing Research Articles (Genetics) by Title

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  • The transcriptome of Pinus pinaster under Fusarium circinatum challenge 
    Hernandez-Escribano, Laura; Visser, Erik A.; Iturritxa, Eugenia; Raposo, Rosa; Naidoo, Sanushka (BioMed Central, 2020-01-08)
    BACKGROUND : Fusarium circinatum, the causal agent of pitch canker disease, poses a serious threat to several Pinus species affecting plantations and nurseries. Although Pinus pinaster has shown moderate resistance to F. ...
  • Transcriptome profiling of potato (Solanum tuberosum L.) responses to root-knot nematode (Meloidogyne javanica) infestation during a compatible interaction 
    Macharia, Teresia Nyambura; Bellieny-Rabelo, Daniel; Moleleki, Lucy Novungayo (MDPI, 2020-09)
    Root-knot nematode (RKN) Meloidogyne javanica presents a great challenge to Solanaceae crops, including potato. In this study, we investigated transcriptional responses of potato roots during a compatible interaction ...
  • A transcriptome-wide association study among 97,898 women to identify candidate susceptibility genes for epithelial ovarian cancer risk 
    Lu, Yingchang; Beeghly-Fadiel, Alicia; Wu, Lang; Guo, Xingyi; Li, Bingshan; Schildkraut, Joellen M.; Im, HaeKyung; Chen, Yian A.; Permuth, Jennifer B.; Reid, Brett M.; Teer, Jamie K.; Moysich, Kirsten B.; Andrulis, Irene L.; Anton-Culver, Hoda; Arun, Banu K.; Bandera, Elisa V.; Barkardottir, Rosa B.; Barnes, Daniel R.; Benitez, Javier; Bjorge, Line; Brenton, James; Butzow, Ralf; Caldes, Trinidad; Caligo, Maria A.; Campbell, Ian; Chang-Claude, Jenny; Claes, Kathleen B.M.; Couch, Fergus J.; Cramer, Daniel W.; Daly, Mary B.; DeFazio, Anna; Dennis, Joe; Diez, Orland; Domchek, Susan M.; Dörk, Thilo; Easton, Douglas F.; Eccles, Diana M.; Fasching, Peter A.; Fortner, Renée T.; Fountzilas, George; Friedman, Eitan; Ganz, Patricia A.; Garber Judy; Giles, Graham G.; Godwin, Andrew K.; Goldgar, David E.; Goodman, Marc T.; Greene, Mark H.; Gronwald, Jacek; Hamann, Ute; Heitz, Florian; Hildebrandt, Michelle A.T.; Høgdall, Claus K.; Hollestelle, Antoinette; Hulick, Peter J.; Huntsman, David G.; Imyanitov, Evgeny N.; Isaacs, Claudine; Jakubowska, Anna; James, Paul; Karlan, Beth Y.; Kelemen, Linda E.; Kiemeney, Lambertus A.; Kjaer, Susanne K.; Kwong, Ava; Le, Nhu D.; Leslie, Goska; Lesueur, Fabienne; Levine, Douglas A.; Mattiello, Amalia; May, Taymaa; McGuffog, Lesley; McNeish, Iain A.; Merritt, Melissa A.; Modugno, Francesmary; Montagna, Marco; Neuhausen, Susan L.; Nevanlinna, Heli; Nielsen, Finn C.; Nikitina-Zake, Liene; Nussbaum, Robert L.; Offit, Kenneth; Olah, Edith; Olopade, Olufunmilayo I.; Olson, Sara H.; Olsson, Håkan K.; Osorio, Ana; Park, Sue K.; Parsons, Michael T.; Peeters, Petra H.M.; Pejovic, Tanja; Peterlongo, Paolo; Phelan, Catherine M.; Pujana, Miquel Angel; Ramus, Susan J.; Rennert, Gad; Risch, Harvey; Rodriguez, Gustavo C.; Rodríguez-Antona, Cristina; Romieu, Isabelle; Rookus, Matti A.; Rossing, Mary Anne; Rzepecka, Iwona K.; Sandler, Dale P.; Schmutzler, Rita K.; Setiawan, Veronica W.; Sharma, Priyanka; Sieh, Weiva; Simard, Jacques; Singer, Christian F.; Song, Honglin; Southey, Melissa C.; Spurdle, Amanada B.; Sutphen, Rebecca; Swerdlow, Anthony J.; Teixeira, Manuel R.; Teo, Soo H.; Thomassen, Mads; Tischkowitz, Marc; Toland, Amanda E.; Trichopoulou, Antonia; Tung, Nadine; Tworoger, Shelley S.; Jansen van Rensburg, Elizabeth; Vanderstichele, Adriaan; Vega, Ana; Edwards, Digna Velez; Webb, Penelope M.; Weitzel, Jeffrey N.; Wentzensen, Nicolas; White, Emily; Wolk, Alicja; Wu, Anna H.; Yannoukakos, Drakoulis; Zorn, Kristin K.; Gayther, Simon A.; Antoniou, Antonis C.; Berchuck, Andrew; Goode, Ellen L.; Chenevix-Trench, Georgia; Sellers, Thomas A.; Pharoah, Paul D.P.; Zheng, Wei; Long, Jirong (American Association for Cancer Research, 2018-09)
    Large-scale genome-wide association studies (GWAS) have identified approximately 35 loci associated with epithelial ovarian cancer (EOC) risk. The majority of GWAS-identified disease susceptibility variants are located in ...
  • Transcriptome-wide association study of breast cancer risk by estrogen-receptor status 
    Feng, Helian; Gusev, Alexander; Pasaniuc, Bogdan; Wu, Lang; Long, Jirong; Abu-full, Zomoroda; Aittomäki, Kristiina; Andrulis, Irene L.; Anton-Culver, Hoda; Antoniou, Antonis C.; Arason, Adalgeir; Arndt, Volker; Aronson, Kristan J.; Arun, Banu K.; Asseryanis, Ella; Auer, Paul L.; Azzollini, Jacopo; Balmana, Judith; Barkardottir, Rosa B.; Barnes, Daniel R.; Barrowdale, Daniel; Beckmann, Matthias W.; Behrens, Sabine; Benitez, Javier; Bermisheva, Marina; Białkowska, Katarzyna; Blanco, Ana; Blomqvist, Carl; Boeckx, Bram; Bogdanova, Natalia V.; Bojesen, Stig E.; Bolla, Manjeet K.; Bonanni, Bernardo; Borg, Ake; Brauch, Hiltrud; Brenner, Hermann; Briceno, Ignacio; Broeks, Annegien; Bruning, Thomas; Burwinkel, Barbara; Cai, Qiuyin; Caldés, Trinidad.; Caligo, Maria A.; Campbell, Ian; Canisius, Sander; Campa, Daniele; Carter, Brian D.; Carter, Jonathan; Castelao, Jose E.; Chang-Claude, Jenny; Chanock, Stephen J.; Christiansen, Hans; Chung, Wendy K.; Claes, Kathleen B.M.; Clarke, Christine L.; Couch, Fergus J.; Cox, Angela; Cross, Simon S.; Cybulski, Cezary; Czene, Kamila; Daly, Mary B.; De la Hoya, Miguel; De Leeneer, Kim; Dennis, Joe; Devilee, Peter; Diez, Orland; Domchek, Susan M.; Dork, Thilo; Dos-Santos-Silva, Isabel; Dunning, Alison M.; Dwek, Miriam; Eccles, Diana M.; Ejlertsen, Bent; Ellberg, Carolina; Engel, Christoph; Eriksson, Mikael; Fasching, Peter A.; Fletcher, Olivia; Flyger, Henrik; Fostira, Florentia; Friedman, Eitan; Fritschi, Lin; Frost, Debra; Gabrielson, Marike; Ganz, Patricia A.; Gapstur, Susan M.; Garber, Judy; Garcia-Closas, Montserrat; Garcia-Saenz, Jose A.; Gaudet, Mia M.; Giles, Graham G.; Glendon, Gord; Godwin, Andrew K.; Goldberg, Mark S.; Goldgar, David E.; Gonzalez-Neira, Anna; Greene, Mark H.; Gronwald, Jacek; Guénel, Pascal; Haiman, Christopher A.; Hall, Per; Hamann, Ute; Hake, Christopher; He, Wei; Heyworth, Jane; Hogervorst, Frans B.L.; Hollestelle, Antoinette; Hooning, Maartje J.; Hoover, Robert N.; Hopper, John L.; Huang, Guanmengqian; Humphreys, Keith; Imyanitov, Evgeny N.; Isaacs, Claudine; Jakimovska, Milena; Jakubowska, Anna; James, Paul; Janavicius, Ramunas; Jankowitz, Rachel C.; John, Esther M.; Johnson, Nichola; Joseph, Vijai; Jung, Audrey; Karlan, Beth Y.; Khusnutdinova, Elza; Kiiski, Johanna I.; Konstantopoulou, Irene; Kristensen, Vessela; Laitman, Yael; Lambrechts, Diether; Lazaro, Conxi; Leroux, Dominique; Leslie, Goska; Lester, Jenny; Lesueur, Fabienne; Lindor, Noralane; Lindstrom, Sara; Lo, Wing-Yee; Loud, Jennifer T.; Lubinski, Jan; Makalic, Enes; Mannermaa, Arto; Manoochehri, Mehdi; Manoukian, Siranoush; Margolin, Sara; Martens, John W.M.; Martinez, Maria E.; Matricardi, Laura; Maurer, Tabea; Mavroudis, Dimitrios; McGuffog, Lesley; Meindl, Alfons; Menon, Usha; Michailidou, Kyriaki; Kapoor, Pooja M.; Miller, Austin; Montagna, Marco; Moreno, Fernando; Moserle, Lidia; Mulligan, Anna M.; Muranen, Taru A.; Nathanson, Katherine L.; Neuhausen, Susan L.; Nevanlinna, Heli; Nevelsteen, Ines; Nielsen, Finn C.; Nikitina-Zake, Liene; Offit, Kenneth; Olah, Edith; Olopade, Olufunmilayo I.; Olsson, Hakan; Osorio, Ana; Papp, Janos; Park-Simon, Tjoung-Won; Parsons, Michael T.; Pedersen, Inge S.; Peixoto, Ana; Peterlongo, Paolo; Peto, Julian; Pharoah, Paul D.P.; Phillips, Kelly-Anne; Plaseska-Karanfilska, Dijana; Poppe, Bruce; Pradhan, Nisha; Prajzendanc, Karolina; Presneau, Nadege; Punie, Kevin; Pylkäs, Katri; Radice, Paolo; Rantala, Johanna; Rashid, Muhammad Usman; Rennert, Gad; Risch, Harvey A.; Robson, Mark; Romero, Atocha; Saloustros, Emmanouil; Sandler, Dale P.; Santos, Catarina; Sawyer, Elinor J.; Schmidt, Marjanka K.; Schmidt, Daniel F.; Schmutzler, Rita K.; Schoemaker, Minouk J.; Scott, Rodney J.; Sharma, Priyanka; Shu, Xiao-Ou; Simard, Jacques; Singer, Christian F.; Skytte, Anne-Bine; Soucy, Penny; Southey, Melissa C.; Spinelli, John J.; Spurdle, Amanda B.; Stone, Jennifer; Swerdlow, Anthony J.; Tapper, William J.; Taylor, Jack A.; Teixeira, Manuel R.; Terry, Mary Beth; Teule, Alex; Thomassen, Mads; Thöne, Kathrin; Thull, Darcy L.; Tischkowitz, Marc; Toland, Amanda E.; Tollenaar, Rob A.E.M.; Torres, Diana; Truong, Therese; Tung, Nadine; Vachon, Celine M.; Van den Ouweland, Ans M.W.; Van Asperen, Christi J.; Jansen van Rensburg, Elizabeth; Vega, Ana; Viel, Alessandra; Vieiro-Balo, Paula; Wang, Qin; Wappenschmidt, Barbara; Weinberg, Clarice R.; Weitzel, Jeffrey N.; Wendt, Camilla; Winqvist, Robert; Yang, Xiaohong R.; Yannoukakos, Drakoulis; Ziogas, Argyrios; Milne, Roger L.; Easton., Douglas F.; Chenevix-Trench, Georgia; Zheng, Wei; Kraft, Peter; Jiang, Xia (Wiley, 2020-07)
    Previous transcriptome-wide association studies (TWAS) have identified breast cancer risk genes by integrating data from expression quantitative loci and genome-wide association studies (GWAS), but analyses of breast ...
  • Transcriptomic analysis of the poultry red mite, Dermanyssus gallinae, across all stages of the lifecycle 
    Bartley, Kathryn; Chen, Wan; Mills, Richard I. Lloyd; Nunn, Francesca; Price, Daniel R.G.; Rombauts, Stephane; Van de Peer, Yves; Roy, Lise; Nisbet, Alasdair J.; Burgess, Stewart T.G. (BMC, 2021-04)
    BACKGROUND: The blood feeding poultry red mite (PRM), Dermanyssus gallinae, causes substantial economic damage to the egg laying industry worldwide, and is a serious welfare concern for laying hens and poultry house workers. ...
  • Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat 
    Perazzolli, Michele; Herrero, Noemí; Sterck, Lieven; Lenzi, Luisa; Pellegrini, Alberto; Puopolo, Gerardo; Van de Peer, Yves; Pertot, Ilaria (BioMed Central, 2016-10-27)
    BACKGROUND : Soil microorganisms are key determinants of soil fertility and plant health. Soil phytopathogenic fungi are one of the most important causes of crop losses worldwide. Microbial biocontrol agents have been ...
  • Transferring an Agrobacterium-mediated transformation protocol across eight genera in the Ceratocystidaceae 
    Lane, Frances Alice; Du Plessis, Deanne; Wingfield, Brenda D.; Wilken, Pieter Markus (Wiley, 2021-06)
    Establishing a transformation system is an essential first step for functional studies. Numerous transformation systems have been developed and optimized for filamentous ascomycetes, including Agrobacterium-mediated ...
  • Transmission ratio distortion in an interspecific cross between Fusarium circinatum and Fusarium subglutinans 
    De Vos, Lieschen; Van der Merwe, Nicolaas Albertus (Albie); Wingfield, Michael J.; Myburg, Alexander Andrew; Wingfield, Brenda D. (Springer, 2013-02)
    Previously, an interspecific cross between Fusarium circinatum and Fusarium subglutinans was used to generate a genetic linkage map. A ca. 55 % of genotyped markers displayed transmission ratio distortion (TRD) that ...
  • TRAPID : an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes 
    Van Bel, Michiel; Proost, Sebastian; Van Neste, Christophe; Deforce, Dieter; Van de Peer, Yves; Vandepoele, Klaas (BioMed Central, 2013-12-13)
    Transcriptome analysis through next-generation sequencing technologies allows the generation of detailed gene catalogs for non-model species, at the cost of new challenges with regards to computational requirements ...
  • Tree health in South Africa : retrospect and prospect 
    Wingfield, Michael J.; Hurley, Brett Phillip; Wingfield, Brenda D.; Slippers, Bernard (AOSIS Open Journals, 2020-11-26)
    South Africa is a country with very limited natural forest cover. Consequently, the timber and fibre needs of the country cannot be provided for from indigenous forest. It is largely for this reason that South Africa ...
  • Trinickia dabaoshanensis sp. nov., a new name for a lost species 
    Estrada-de los Santos, Paulina; Palmer, Marike; Steenkamp, Emma Theodora; Maluk, Marta; Beukes, Chrizelle Winsie; Hirsch, Ann M.; James, Euan K.; Venter, S.N. (Stephanus Nicolaas) (Springer, 2019-11)
    “Burkholderia dabaoshanensis” was described in 2012. Although the name was effectively published, it could not be validly published, because the description provided in the original paper did not comply with the Rule 27 ...
  • The triterpene, methyl-3β-hydroxylanosta-9,24-dien-21-oate (RA3), attenuates high glucose-induced oxidative damage and apoptosis by improving energy metabolism 
    Sangweni, Nonhlakanipho F.; Mosa, Rebamang Anthony; Dludla, Phiwayinkosi V.; Kappo, Abidemi P.; Opoku, Andy R.; Muller, Christo J. F.; Johnson, Rabia (Elsevier, 2021-05)
    BACKGROUND: Hyperglycemia-induced cardiovascular dysfunction has been linked to oxidative stress and accelerated apoptosis in the diabetic myocardium. While there is currently no treatment for diabetic cardiomyopathy (DCM), ...
  • Trophic selective pressures organize the composition of endolithic microbial communities from global deserts 
    Qu, Evan B.; Omelon, Chris R.; Oren, Aharon; Meslier, Victoria; Cowan, Don A.; Maggs-Kolling, Gillian; DiRuggiero, Jocelyne (Frontiers Media, 2020-01-08)
    Studies of microbial biogeography are often convoluted by extremely high diversity and differences in microenvironmental factors such as pH and nutrient availability. Desert endolithic (inside rock) communities are ...
  • Tuber storage proteins as potential precursors of bioactive peptides : an in silico analysis 
    Ibrahim, Mohammed Auwal; Bester, Megan Jean; Neitz, Albert Walter Herman; Gaspar, Anabella Regina Marques (Springer, 2019-06)
    In silico analysis was used to evaluate storage proteins from plant tubers as potential precursors of bioactive peptides after simulated gastrointestinal digestion. Proteins derived from potato (patatins), sweet potato ...
  • Two new Ceratocystis species associated with mango disease in Brazil 
    Van Wyk, Marelize; Wingfield, Brenda D.; Al Adawi, Ali Obaid; Rossetto, Carlos J.; Ito, Margarida Fumiko; Wingfield, Michael J. (© 1996–2011 Mycotaxon, Ltd., 2011-07)
    Mangifera indica, a disease known as mango blight, murcha or seca da mangueira in Brazil, is caused by the canker wilt pathogen Ceratocystis fimbriata sensu lato. It is also closely associated with infestation by the ...
  • Two new Ophiostoma species from Protea caffra in Zambia 
    Roets, Francois; Wingfield, Brenda D.; De Beer, Z. Wilhelm; Wingfield, Michael J.; Dreyer, Leanne Laurette (Nationaal Herbarium Nederland & Centraalbureau voor Schimmelcultures, 2010-06)
    The genus Ophiostoma (Ophiostomatales) has a global distribution and species are best known for their association with bark beetles (Curculionidae: Scolytinae) on conifers. An unusual assemblage of these fungi is closely ...
  • Tylosis associated with squamous cell carcinoma of the oesophagus (TOC) : report of an African family with a novel RHBDF2 variant 
    Mokoena, Taole; Smit, J.G.M.; Karusseit, V.O.L. (Otto); Dorfling, Cecilia Maria; Jansen van Rensburg, Elizabeth (Wiley, 2018-05)
    No abstract available.
  • Ultralow-density Plasmodium falciparum infections in African settings 
    Awandu, Shehu Shagari; Raman, Jaishree; Bousema, Teun; Birkholtz, Lyn-Marie (Oxford University Press, 2019-10)
    No abstract available.
  • Uncovering the defence responses of Eucalyptus to pests and pathogens in the genomics age 
    Naidoo, Sanushka; Kulheim, Carsten; Zwart, Lizahn; Mangwanda, Ronishree; Oates, Caryn Nicole; Visser, Erik A.; Wilken, Febe E.; Mamni, Thandekile B.; Myburg, Alexander Andrew (Oxford University Press, 2014-09)
    Long-lived tree species are subject to attack by various pests and pathogens during their lifetime. This problem is exacerbated by climate change which may increase the host range for pathogens and extend the period of ...
  • Understanding diversity patterns in bacterioplankton communities from a sub-Antarctic peatland 
    Quiroga, María Victoria; Valverde, Angel; Mataloni, Gabriela; Cowan, Don A. (Wiley, 2015-06)
    Bacterioplankton communities inhabiting peatlands have the potential to influence local ecosystem functions. However, most microbial ecology research in such wetlands has been done in ecosystems (mostly peat soils) of ...