Browsing Research Articles (Forestry and Agricultural Biotechnology Institute (FABI)) by UP Author "Duong, Tuan A."

Browsing Research Articles (Forestry and Agricultural Biotechnology Institute (FABI)) by UP Author "Duong, Tuan A."

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  • Bark beetle mycobiome : collaboratively defined research priorities on a widespread insect-fungus symbiosis 
    Hulcr, Jiri; Barnes, Irene; De Beer, Z. Wilhelm; Duong, Tuan A.; Gazis, Romina; Johnson, Andrew J.; Jusino, Michelle A.; Kasson, Matthew T.; Li, You; Lynch, Shannon; Mayers, Chase; Musvuugwa, Tendai; Roets, Francois; Seltmann, Katja C.; Six, Diana; Vanderpool, Dan; Villari, Caterina (Springer, 2020-06-03)
    One of the main threats to forests in the Anthropocene are novel or altered interactions among trees, insects and fungi. To critically assess the contemporary research on bark beetles, their associated fungi, and their ...
  • Black root rot : a long known but little understood disease 
    Nel, Wilma Janine; Duong, Tuan A.; De Beer, Z. Wilhelm; Wingfield, Michael J. (Wiley, 2019-06)
    Black root rot caused by the pathogen Thielaviopsis basicola has been known since the mid 1800s. The disease is important on many agricultural and ornamental plant species and has been found in at least 31 countries. Since ...
  • Blast from the past : a study of decades-old fungal cultures resolves a long-standing tree disease mystery 
    Wingfield, Michael J.; Pham, N.Q.; Marincowitz, Seonju; Duong, Tuan A.; Wingfield, Brenda D.; Wilson, A.M. (Andi) (Springer, 2023-09)
    A root disease in plantations of Pinus radiata and Pinus pinaster, where trees died in distinct patches, was present in the Western Cape province of South Africa during the 1970s and 1980s. Phytophthora cinnamomi was ...
  • Bretziella, a new genus to accommodate the oak wilt fungus, Ceratocystis fagacearum (Microascales, Ascomycota) 
    De Beer, Z. Wilhelm; Marincowitz, Seonju; Duong, Tuan A.; Wingfield, Michael J. (Pensoft Publishers, 2017-10)
    Recent reclassification of the Ceratocystidaceae (Microascales) based on multi-gene phylogenetic inference has shown that the oak wilt fungus Ceratocystis fagacearum does not reside in any of the four genera in which it ...
  • Characterisation of the mating-type loci in species of Elsinoe causing scab diseases 
    Pham, Nam Q.; Duong, Tuan A.; Wingfield, Brenda D.; Barnes, Irene; Duran, Alvaro; Wingfield, Michael J. (Elsevier, 2023-12)
    The genus Elsinoe includes many aggressive plant pathogens that infect various economically important agricultural, horticultural and forestry plants. Significant diseases include citrus scab caused by E. fawcettii and E. ...
  • Chromium sequencing : the doors open for genomics of obligate plant pathogens 
    McTaggart, Alistair R.; Duong, Tuan A.; Le, Vang Quy; Shuey, Louise S.; Smidt, Werner; Naidoo, Sanushka; Wingfield, Michael J.; Wingfield, Brenda D. (Future Medicine, 2018-11)
    It is challenging to sequence and assemble genomes of obligate plant pathogens and microorganisms because of limited amounts of DNA, comparatively large genomes and high numbers of repeat regions. We sequenced the 1.2 ...
  • Diversity and distribution of Calonectria species from plantation and forest soils in Fujian province, China 
    Liu, Q.L.; Wingfield, Michael J.; Duong, Tuan A.; Wingfield, Brenda D.; Chen, ShuaiFei (MDPI, 2022-07-31)
    To meet the growing demand for wood and pulp products, Eucalyptus plantations have expanded rapidly during the past two decades, becoming an integral part of the southern China landscape. Leaf blight caused by various ...
  • Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips 
    Wingfield, Brenda D.; Berger, David Kenneth; Steenkamp, Emma Theodora; Lim, Hye-Jin; Duong, Tuan A.; Bluhm, Burton H.; De Beer, Z. Wilhelm; De Vos, Lieschen; Fourie, Gerda; Naidoo, Kershney; Olivier, Nicholas Abraham; Lin, Yao-Cheng; Van de Peer, Yves; Joubert, Fourie; Crampton, Bridget Genevieve; Swart, Velushka; Soal, Nicole Christine; Tatham, Catherine; Van der Nest, Magrieta Aletta; Van der Merwe, Nicolaas Albertus (Albie); Van Wyk, Stephanie; Wilken, Pieter Markus; Wingfield, Michael J. (International Mycological Association, 2017-11-21)
    The genomes of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens, and Ophiostoma ips are presented in this genome announcement. Three of these genomes are from plant pathogens and ...
  • Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata 
    Wingfield, Brenda D.; Bills, Gerald F.; Dong, Yang; Huang, Wenli; Nel, Wilma Janine; Swalarsk-Parry, Benedicta S.; Vaghefi, Niloofar; Wilken, Pieter Markus; An, Zhiqiang; De Beer, Z. Wilhelm; De Vos, Lieschen; Chen, Li; Duong, Tuan A.; Gao, Yun; Hammerbacher, Almuth; Kikkert, Julie R.; Li, Yan; Li, Huiying; Li, Kuan; Li, Qiang; Liu, Xingzhong; Ma, Xiao; Naidoo, Kershney; Pethybridge, Sarah J.; Sun, Jingzu; Steenkamp, Emma Theodora; Van der Nest, Magrieta Aletta; Van Wyk, Stephanie; Wingfield, Michael J.; Xiong, Chuan; Yue, Qun; Zhang, Xiaoling (International Mycological Association, 2018-06-11)
    Draft genomes of the species Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, ...
  • Draft genome sequences for Ceratocystis fagacearum, C. harringtonii, Grosmannia penicillata, and Huntiella bhutanensis 
    Wingfield, Brenda D.; Duong, Tuan A.; Hammerbacher, Almuth; Van der Nest, Magrieta Aletta; Wilson, Andrea M.; Chang, Runlei; De Beer, Z. Wilhelm; Steenkamp, Emma Theodora; Wilken, Pieter Markus; Naidoo, Kershney; Wingfield, Michael J. (International Mycological Association, 2016-11-29)
    Draft genomes for the fungi Ceratocystis fagacearum, C. harringtonii, Grosmannia penicillata, and Huntiella bhutanensis are presented. Ceratocystis fagacearum is a major causal agent of vascular wilt of oaks and other ...
  • Draft genome sequences of Ambrosiella cleistominuta, Cercospora brassicicola, C. citrullina, Physcia stellaris, and Teratosphaeria pseudoeucalypti 
    Wilken, Pieter Markus; Aylward, Janneke; Chand, Ramesh; Lane, Frances Alice; Sinha, Shagun; Ametrano, Claudio; Distefano, Isabel; Divakar, Pradeep K.; Duong, Tuan A.; Huhndorf, Sabine; Kharwar, Ravindra N.; Lumbsch, H. Thorsten; Navathe, Sudhir; Pérez, Carlos A.; Ramírez-Berrutti, Nazaret; Sharma, Rohit; Sun, Yukun; Wingfield, Brenda D.; Wingfield, Michael J. (BioMed Central, 2020)
    Draft genomes of the fungal species Ambrosiella cleistominuta, Cercospora brassicicola, C. citrullina, Physcia stellaris, and Teratosphaeria pseudoeucalypti are presented. Physcia stellaris is an important lichen forming ...
  • Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata 
    Wingfield, Brenda D.; Ades, Peter K.; Al-Naemi, Fatima A.; Beirn, Lisa A.; Bihon, Wubetu; Crouch, Jo Anne; De Beer, Z. Wilhelm; De Vos, Lieschen; Duong, Tuan A.; Fields, Christopher J.; Fourie, Gerda; Kanzi, Aquillah M.; Malapi-Wight, Martha; Pethybridge, Sarah J.; Radwan, Osman; Rendon, Gloria; Slippers, Bernard; Santana, Quentin C.; Steenkamp, Emma Theodora; Taylor, Paul W.J.; Vaghefi, Niloofar; Van der Merwe, Nicolaas Albertus (Albie); Veltri, Daniel; Wingfield, Michael J. (International Mycological Association, 2015-06-22)
    The genomes of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygami, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata are presented in this genome ...
  • Draft genome sequences of Fusarium xylarioides, Teratosphaeria gauchensis and T. zuluensis and genome annotation for Ceratocystis fimbriata 
    Wingfield, Brenda D.; Fourie, Arista; Simpson, Melissa Claire; Bushula-Njah, Vuyiswa; Aylward, Janneke; Barnes, Irene; Coetzee, Martin Petrus Albertus; Dreyer, Leanne Laurette; Duong, Tuan A.; Geiser, David M.; Roets, Francois; Steenkamp, Emma Theodora; Van der Nest, Magrieta Aletta; Van Heerden, Carel J.; Wingfield, Michael J. (International Mycological Association, 2019-09-13)
    Draft genomes of the fungal species Fusarium xylarioides, Teratosphaeria gauchensis and T. zuluensis are presented. In addition an annotation of the genome of Ceratocystis fimbriata is presented. Overall these genomes ...
  • Filamentous fungi and yeasts associated with mites phoretic on Ips typographus in Eastern Finland 
    Linnakoski, Riikka; Lasarov, Ilmeini; Veteli, Pyry; Tikkanen, Olli-Pekka; Viiri, Heli; Jyske, Tuula; Kasanen, Risto; Duong, Tuan A.; Wingfield, Michael J. (MDPI, 2021-06-04)
    The European spruce bark beetle (Ips typographus) has become a major forest pest in Finland in recent years. The beetle is a well-known vector of mainly ophiostomatoid fungi causing bluestain of timber and pathogens that ...
  • Four new species of Harringtonia: unravelling the laurel wilt fungal genus 
    Araujo, Joao; Li, You; Duong, Tuan A.; Smith, Matthew E.; Adams, Sawyer; Hulcr, Jiri (MDPI, 2022-06-08)
    Symbiosis between beetles and fungi arose multiple times during the evolution of both organisms. Some of the most biologically diverse and economically important are mutualisms in which the beetles cultivate and feed on ...
  • Fungal associates of an invasive pine-infesting bark beetle, Dendroctonus valens, including seven new Ophiostomatalean fungi 
    Marincowitz, Seonju; Duong, Tuan A.; Taerum, Stephen J.; De Beer, Z. Wilhelm; Wingfield, Michael J. (Naturalis Biodiversity Center and Centraalbureau voor Schimmelcultures, 2020-07-22)
    The red turpentine beetle (RTB; Dendroctonus valens) is a bark beetle that is native to Central and North America. This insect is well-known to live in association with a large number of Ophiostomatalean fungi. The beetle ...
  • Fungal planet description sheets : 371–399 
    Crous, Pedro W.; Wingfield, Michael J.; De Beer, Z. Wilhelm; Marincowitz, Seonju; Duong, Tuan A.; Le Roux, J.J.; Richardson, D.M.; Strasberg, D.; Shivas, R.G.; Alvarado, P.; Edwards, J.; Moreno, G.; Sharma, R.; Sonawane, M.S.; Tan, Y.P.; Altes, A.; Barasubiye, T.; Barnes, C.W.; Blanchette, R.A.; Boertmann, D.; Bogo, A.; Carlavilla, J.R.; Cheewangkoon, R.; Daniel, R.; Yanez-Morales, M. de Jesus; Fernandez-Vicente, J.; Geering, A.D.W.; Guest, D.I.; Held, B.W.; Heykoop, M.; Hubka, V.; Ismail, A.M.; Kajale, S.C.; Khemmuk, W.; Karalik, M.; Kurli, R.; Lebeuf, R; Levesque, C.A.; Lombard, L.; Magista, D.; Manjon, J.L.; Mohedano, J.M.; Novakova, A.; Oberlies, N.H.; Otto, E.C.; Paguigan, N.D.; Pascoe, I.G.; Perez-Butron, J.L.; Perrone, G.; Raja, H.A.; Rahi, P.; Raja, H.A.; Rintoul, T.; Sanhueza, R.M.V.; Scarlett, K.; Shouche, Y.S.; Shuttleworth, L.A.; Taylor, P.W.J.; Thorn, R.G.; Vawdrey, L.L.; Solano-Vidal, R.; Voitk, A.; Wong, P.T.W.; Wood, A.R.; Zamora, J.C.; Groenewald, Johannes Zacharias (Naturalis Biodiversity Center and Centraalbureau voor Schimmelcultures, 2015)
    Novel species of fungi described in the present study include the following from Australia: Neoseptorioides eucalypti gen. & sp. nov. from Eucalyptus radiata leaves, Phytophthora gondwanensis from soil, Diaporthe tulliensis ...
  • Generic boundaries in the Ophiostomatales reconsidered and revised 
    De Beer, Z. Wilhelm; Procter, M.; Wingfield, Michael J.; Marincowitz, Seonju; Duong, Tuan A. (Elsevier, 2022-03-30)
    The Ophiostomatales was erected in 1980. Since that time, several of the genera have been redefined and others have been described. There are currently 14 accepted genera in the Order. They include species that are the ...
  • Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential 
    Engelbrecht, Juanita; Duong, Tuan A.; Prabhu, Sreedhara Ashok; Seedat, Mohamed; Van den Berg, Noelani (BMC, 2021)
    BACKGROUND: Phytophthora cinnamomi is an oomycete pathogen of global relevance. It is considered as one of the most invasive species, which has caused irreversible damage to natural ecosystems and horticultural crops. ...
  • A high-quality draft genome sequence of Neonectria faginata, causative agent of beech bark disease of Fagus grandifolia 
    Morrison, Eric W.; Duong, Tuan A.; Garnas, Jeff R. (American Society for Microbiology, 2024-02)
    The draft genome of Neonectria faginata was sequenced with Oxford Nanopore and Illumina 250 bp paired-end sequencing technologies. The assembled genome was 42.9 Mb distributed over 24 contigs, with N50 of 4.4 Mb and 98.6% ...