Browsing Research Articles (Forestry and Agricultural Biotechnology Institute (FABI)) by Subject "Pantoea"

Browsing Research Articles (Forestry and Agricultural Biotechnology Institute (FABI)) by Subject "Pantoea"

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  • Comparative genomics of the type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins 
    De Maayer, Pieter; Venter, S.N. (Stephanus Nicolaas); Kamber, Tim; Duffy, Brion; Coutinho, Teresa A.; Smits, Theo H.M. (BioMed Central, 2011)
    BACKGROUND: The Type VI secretion apparatus is assembled by a conserved set of proteins encoded within a distinct locus. The putative effector proteins Hcp and VgrG are also encoded within these loci. We have identified numerous ...
  • Genome-based characterization of biological processes that differentiate closely related bacteria 
    Palmer, Marike; Steenkamp, Emma Theodora; Coetzee, Martin Petrus Albertus; Blom, Jochen; Venter, S.N. (Stephanus Nicolaas) (Frontiers Media, 2018-02-06)
    Bacteriologists have strived toward attaining a natural classification system based on evolutionary relationships for nearly 100 years. In the early twentieth century it was accepted that a phylogeny-based system would ...
  • Mixta gen. nov., a new genus in the Erwiniaceae 
    Palmer, Marike; Steenkamp, Emma Theodora; Coetzee, Martin Petrus Albertus; Avontuur, Juanita R.; Chan, Wai Yin; Van Zyl, Elritha; Blom, Jochen; Venter, S.N. (Stephanus Nicolaas) (Microbiology Society, 2018-04)
    The Erwiniaceae contain many species of agricultural and clinical importance. Although relationships among most of the genera in this family are relatively well resolved, the phylogenetic placement of several taxa remains ...
  • Practically delineating bacterial species with genealogical concordance 
    Venter, S.N. (Stephanus Nicolaas); Palmer, Marike; Beukes, Chrizelle Winsie; Chan, Wai Yin; Shin, Giyoon; Van Zyl, Elritha; Seale, Tarren; Coutinho, Teresa A.; Steenkamp, Emma Theodora (Springer, 2017-10)
    Bacterial species are commonly defined by applying a set of predetermined criteria, including DNA–DNA hybridization values, 16S rRNA gene sequence similarity, phenotypic data as well as genome-based criteria such as average ...