Description of two cultivated and two uncultivated new Salinibacter species, one named following the rules of the bacteriological code: Salinibacter grassmerensis sp. nov.; and three named following the rules of the SeqCode: Salinibacter pepae sp. nov., Salinibacter abyssi sp. nov., and Salinibacter pampae sp. nov.

dc.contributor.authorViver, Tomeu
dc.contributor.authorConrad, Roth E.
dc.contributor.authorLucio, Marianna
dc.contributor.authorHarir, Mourad
dc.contributor.authorUrdiain, Mercedes
dc.contributor.authorGago, Juan F.
dc.contributor.authorSuarez-Suarez, Ana
dc.contributor.authorBustos-Caparros, Esteban
dc.contributor.authorSanchez-Martinez, Rodrigo
dc.contributor.authorMayol, Eva
dc.contributor.authorFassetta, Federico
dc.contributor.authorPang, Jinfeng
dc.contributor.authorGridan, Ionuț Madalin
dc.contributor.authorVenter, S.N. (Stephanus Nicolaas)
dc.contributor.authorSantos, Fernando
dc.contributor.authorBaxter, Bonnie
dc.contributor.authorLlames, María E.
dc.contributor.authorCristea, Adorjan
dc.contributor.authorBanciu, Horia L.
dc.contributor.authorHedlund, Brian P.
dc.contributor.authorStott, Matthew B.
dc.contributor.authorKampfer, Peter
dc.contributor.authorAmann, Rudolf
dc.contributor.authorSchmitt-Kopplin, Philippe
dc.contributor.authorKonstantinidis, Konstantinos T.
dc.contributor.authorRossello-Mora, Ramon
dc.date.accessioned2024-01-15T12:32:20Z
dc.date.available2024-01-15T12:32:20Z
dc.date.issued2023-05
dc.descriptionDATA AVAILABILITY : All data is publicly available in research repositories.en_US
dc.description.abstractCurrent ‐omics methods allow the collection of a large amount of information that helps in describing the microbial diversity in nature. Here, and as a result of a culturomic approach that rendered the collection of thousands of isolates from 5 different hypersaline sites (in Spain, USA and New Zealand), we obtained 21 strains that represent two new Salinibacter species. For these species we propose the names Salinibacter pepae sp. nov. and Salinibacter grassmerensis sp. nov. (showing average nucleotide identity (ANI) values < 95.09% and 87.08% with Sal. ruber M31T, respectively). Metabolomics revealed species‐specific discriminative profiles. Sal. ruber strains were distinguished by a higher percentage of polyunsaturated fatty acids and specific Nfunctionalized fatty acids; and Sal. altiplanensis was distinguished by an increased number of glycosylated molecules. Based on sequence characteristics and inferred phenotype of metagenome‐assembled genomes (MAGs), we describe two new members of the genus Salinibacter. These species dominated in different sites and always coexisted with Sal. ruber and Sal. pepae. Based on the MAGs from three Argentinian lakes in the Pampa region of Argentina and the MAG of the Romanian lake Fără Fund, we describe the species Salinibacter pampae sp. nov. and Salinibacter abyssi sp. nov. respectively (showing ANI values 90.94% and 91.48% with Sal. ruber M31T, respectively). Sal. grassmerensis sp. nov. name was formed according to the rules of the International Code for Nomenclature of Prokaryotes (ICNP), and Sal. pepae, Sal. pampae sp. nov. and Sal. abyssi sp. nov. are proposed following the rules of the newly published Code of Nomenclature of Prokaryotes Described from Sequence Data (SeqCode). This work constitutes an example on how classification under ICNP and SeqCode can coexist, and how the official naming a cultivated organism for which the deposit in public repositories is difficult finds an intermediate solution.en_US
dc.description.departmentBiochemistryen_US
dc.description.departmentForestry and Agricultural Biotechnology Institute (FABI)en_US
dc.description.departmentGeneticsen_US
dc.description.departmentMicrobiology and Plant Pathologyen_US
dc.description.librarianam2024en_US
dc.description.sdgSDG-15:Life on landen_US
dc.description.sponsorshipThe Spanish Ministry of Science, Innovation and Universities projects which were supported by the European Regional Development Fund (FEDER), in part by the U.S. National Science Foundation, a grant of the Ministry of Research, Innovation and Digitization, CNCS/CCCDI – UEFISCDI, the Argentinian National Scientific and Technical Research Council, the National Geographic Society, NASA, and the “Margarita Salas” postdoctoral grant, funded by the Spanish Ministry of Universities, within the framework of Recovery, Transformation and Resilience Plan, and funded by the European Union.en_US
dc.description.urihttp://www.elsevier.com/locate/syapmen_US
dc.identifier.citationViver, T., Conrad, Roth E., Lucio, M. et al. 2023, 'Description of two cultivated and two uncultivated new Salinibacter species, one named following the rules of the bacteriological code: Salinibacter grassmerensis sp. nov.; and three named following the rules of the SeqCode: Salinibacter pepae sp. nov., Salinibacter abyssi sp. nov., and Salinibacter pampae', Systematic and Applied Microbiology, vol. 46, art. 126416, pp. 1-19. https://DOI.org/10.1016/j.syapm.2023.126416.en_US
dc.identifier.issn0723-2020
dc.identifier.other10.1016/j.syapm.2023.126416
dc.identifier.urihttp://hdl.handle.net/2263/93960
dc.language.isoenen_US
dc.publisherElsevieren_US
dc.rights© 2023 The Author(s). Published by Elsevier GmbH. This is an open access article under the CC BY-NC-ND license.en_US
dc.subjectSalinibacteren_US
dc.subjectPhylogenyen_US
dc.subjectGenomicsen_US
dc.subjectTaxonomyen_US
dc.subjectSeqCodeen_US
dc.subjectAverage nucleotide identity (ANI)en_US
dc.subjectMetagenome-assembled genomes (MAGs)en_US
dc.subjectInternational Code for Nomenclature of Prokaryotes (ICNP)en_US
dc.subjectSDG-15: Life on landen_US
dc.titleDescription of two cultivated and two uncultivated new Salinibacter species, one named following the rules of the bacteriological code: Salinibacter grassmerensis sp. nov.; and three named following the rules of the SeqCode: Salinibacter pepae sp. nov., Salinibacter abyssi sp. nov., and Salinibacter pampae sp. nov.en_US
dc.typeArticleen_US

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