Genomic analysis of a multidrug-resistant clinical Providencia rettgeri (PR002) strain with the novel integron ln1483 and an A/C plasmid replicon

dc.contributor.authorMbelle, Nontombi Marylucy
dc.contributor.authorOsei Sekyere, John
dc.contributor.authorAmoako, Daniel Gyamfi
dc.contributor.authorManingi, Nontuthuko Excellent
dc.contributor.authorModipane, Lesedi
dc.contributor.authorEssack, Sabiha Yusuf
dc.contributor.authorFeldman, Charles
dc.date.accessioned2021-08-03T06:41:35Z
dc.date.available2021-08-03T06:41:35Z
dc.date.issued2020-02
dc.descriptionSupplementary material: Figure S1. Prophages of P. rettgeri PR002 were identified using the PHAge Search Tool (PHAST). PR002 contained four intact prophages (red color), one incomplete prophage (gray color), and one questionable prophage (green color).en_ZA
dc.descriptionSupplementary tables: Table S1. Metadata (biosample data) of all sequenced P. rettgeri isolates from NCBI GenBank database Table S2. Genes associated with general COG functional categories in the genome of P. rettgeri PR002. Table S3. Pathogenicity islands (PAIs) predicted for PR002 from VFDB (http://www.paidb.re.kr/about_paidb.php). Table S5. Diversity of metal resistance gene determinants found in PR002 genome.en_ZA
dc.descriptionFile S1. Metadata of isolates used in phylogenomics.en_ZA
dc.description.abstractPlease read abstract in the article.en_ZA
dc.description.departmentMedical Microbiologyen_ZA
dc.description.librarianhj2021en_ZA
dc.description.sponsorshipThe National Health Laboratory Services of South Africaen_ZA
dc.description.urihttps://nyaspubs.onlinelibrary.wiley.com/journal/17496632en_ZA
dc.identifier.citationMbelle, N.M., Osei Sekyere, J., Amoako, D.G. et al. 2020, 'Genomic analysis of a multidrug-resistant clinical Providencia rettgeri (PR002) strain with the novel integron ln1483 and an A/C plasmid replicon', Annals of the New York Academy of Sciences, vol. 1462, no. 1, pp. 92-103.en_ZA
dc.identifier.issn0077-8923 (print)
dc.identifier.issn1749-6632 (online)
dc.identifier.other10.1111/nyas.14237
dc.identifier.urihttp://hdl.handle.net/2263/81097
dc.language.isoenen_ZA
dc.publisherWileyen_ZA
dc.rights© 2020 New York Academy of Sciences. This is the pre-peer reviewed version of the following article : 'Genomic analysis of a multidrug-resistant clinical Providencia rettgeri (PR002) strain with the novel integron ln1483 and an A/C plasmid replicon', Annals of the New York Academy of Sciences, vol. 1462, no. 1, pp. 92-103, 2020, doi : 10.1111/nyas.14237. The definite version is available at : https://nyaspubs.onlinelibrary.wiley.co m/journal/17496632.en_ZA
dc.subjectProvidencia rettgerien_ZA
dc.subjectIncA/C2 plasmiden_ZA
dc.subjectResistomeen_ZA
dc.subjectMobilomeen_ZA
dc.subjectVirulenceen_ZA
dc.subjectSouth Africa (SA)en_ZA
dc.titleGenomic analysis of a multidrug-resistant clinical Providencia rettgeri (PR002) strain with the novel integron ln1483 and an A/C plasmid repliconen_ZA
dc.typePostprint Articleen_ZA

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