Genomic analysis of a multidrug-resistant clinical Providencia rettgeri (PR002) strain with the novel integron ln1483 and an A/C plasmid replicon
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Date
Authors
Mbelle, Nontombi Marylucy
Osei Sekyere, John
Amoako, Daniel Gyamfi
Maningi, Nontuthuko Excellent
Modipane, Lesedi
Essack, Sabiha Yusuf
Feldman, Charles
Journal Title
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Publisher
Wiley
Abstract
Please read abstract in the article.
Description
Supplementary material:
Figure S1. Prophages of P. rettgeri PR002 were identified using the PHAge Search Tool (PHAST). PR002 contained four intact prophages (red color), one incomplete prophage (gray color), and one questionable prophage (green color).
Supplementary tables: Table S1. Metadata (biosample data) of all sequenced P. rettgeri isolates from NCBI GenBank database Table S2. Genes associated with general COG functional categories in the genome of P. rettgeri PR002. Table S3. Pathogenicity islands (PAIs) predicted for PR002 from VFDB (http://www.paidb.re.kr/about_paidb.php). Table S5. Diversity of metal resistance gene determinants found in PR002 genome.
File S1. Metadata of isolates used in phylogenomics.
Supplementary tables: Table S1. Metadata (biosample data) of all sequenced P. rettgeri isolates from NCBI GenBank database Table S2. Genes associated with general COG functional categories in the genome of P. rettgeri PR002. Table S3. Pathogenicity islands (PAIs) predicted for PR002 from VFDB (http://www.paidb.re.kr/about_paidb.php). Table S5. Diversity of metal resistance gene determinants found in PR002 genome.
File S1. Metadata of isolates used in phylogenomics.
Keywords
Providencia rettgeri, IncA/C2 plasmid, Resistome, Mobilome, Virulence, South Africa (SA)
Sustainable Development Goals
Citation
Mbelle, N.M., Osei Sekyere, J., Amoako, D.G. et al. 2020, 'Genomic analysis of a multidrug-resistant clinical Providencia rettgeri (PR002) strain with the novel integron ln1483 and an A/C plasmid replicon', Annals of the New York Academy of Sciences, vol. 1462, no. 1, pp. 92-103.