A Cytoscape app for motif enumeration with ISMAGS
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Date
Authors
Van Parys, Thomas
Melckenbeeck, Ine
Houbraken, Maarten
Audenaert, Pieter
Colle, Didier
Pickavet, Mario
Demeester, Piet
Van de Peer, Yves
Journal Title
Journal ISSN
Volume Title
Publisher
Oxford University Press
Abstract
SUMMARY : We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif’s symmetries to make the search more efficient. The Cytoscape app provides a handy interface for this algorithm,which allows more efficient network analysis.
AVAILABILITY AND IMPLEMENTATION : The Cytoscape app for ISMAGS can be freely downloaded from the Cytoscape App store http://apps.cytoscape.org/apps/ismags. Source code and
documentation for ISMAGS are available at https://github.com/biointec/ismags. Source
code and documentation for the Cytoscape app are available at
https://gitlab.psb.ugent.be/thpar/ISMAGS_Cytoscape.
Description
Keywords
Cytoscape app, Network motifs, Motifs in protein, ISMAGS
Sustainable Development Goals
Citation
Van Parys, T, Melckenbeeck, I, Houbraken, M, Audenaert, P, Colle, D, Pickavet, M, Demeester, P & Van de Peer, Y 2017, 'A Cytoscape app for motif enumeration with ISMAGS, Bioinformatics, vol. 33, no. 3, pp. 461-463.