A Cytoscape app for motif enumeration with ISMAGS
| dc.contributor.author | Van Parys, Thomas | |
| dc.contributor.author | Melckenbeeck, Ine | |
| dc.contributor.author | Houbraken, Maarten | |
| dc.contributor.author | Audenaert, Pieter | |
| dc.contributor.author | Colle, Didier | |
| dc.contributor.author | Pickavet, Mario | |
| dc.contributor.author | Demeester, Piet | |
| dc.contributor.author | Van de Peer, Yves | |
| dc.date.accessioned | 2017-05-02T12:26:36Z | |
| dc.date.issued | 2017-02 | |
| dc.description.abstract | SUMMARY : We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif’s symmetries to make the search more efficient. The Cytoscape app provides a handy interface for this algorithm,which allows more efficient network analysis. AVAILABILITY AND IMPLEMENTATION : The Cytoscape app for ISMAGS can be freely downloaded from the Cytoscape App store http://apps.cytoscape.org/apps/ismags. Source code and documentation for ISMAGS are available at https://github.com/biointec/ismags. Source code and documentation for the Cytoscape app are available at https://gitlab.psb.ugent.be/thpar/ISMAGS_Cytoscape. | en_ZA |
| dc.description.department | Genetics | en_ZA |
| dc.description.embargo | 2018-02-28 | |
| dc.description.librarian | hb2017 | en_ZA |
| dc.description.sponsorship | Ghent University; iMinds; a PhD fellowship of the Research Foundation – Flanders to MH and the Multidisciplinary Research Partnership ‘Bioinformatics: from nucleotides to networks’ Project (no. 01MR0310W) of Ghent University and the European Union Seventh Framework Programme (FP7/2007-2013) under European Research Council Advanced Grant Agreement 322739-DOUBLEUP. | en_ZA |
| dc.description.uri | http://bioinformatics.oxfordjournals.org | en_ZA |
| dc.identifier.citation | Van Parys, T, Melckenbeeck, I, Houbraken, M, Audenaert, P, Colle, D, Pickavet, M, Demeester, P & Van de Peer, Y 2017, 'A Cytoscape app for motif enumeration with ISMAGS, Bioinformatics, vol. 33, no. 3, pp. 461-463. | en_ZA |
| dc.identifier.issn | 1367-4803 (print) | |
| dc.identifier.issn | 1460-2059 (online) | |
| dc.identifier.other | 10.1093/bioinformatics/btw626 | |
| dc.identifier.uri | http://hdl.handle.net/2263/60160 | |
| dc.language.iso | en | en_ZA |
| dc.publisher | Oxford University Press | en_ZA |
| dc.rights | © The Authors 2016. Published by Oxford University Press. This is a pre-copy-editing, author-produced PDF of an article accepted for publication in Bioinformatics following peer review. The definitive publisher-authenticated version is : Title, Bioinformatics, vol. 33, no. 3, pp. 461-463, 2017. doi : 10.1093/bioinformatics/btw626, is available online at : http://beheco.oxfordjournals.org. | en_ZA |
| dc.subject | Cytoscape app | en_ZA |
| dc.subject | Network motifs | en_ZA |
| dc.subject | Motifs in protein | en_ZA |
| dc.subject | ISMAGS | en_ZA |
| dc.title | A Cytoscape app for motif enumeration with ISMAGS | en_ZA |
| dc.type | Postprint Article | en_ZA |