Browsing Postprints (Articles) by Author "Van de Peer, Yves"

Browsing Postprints (Articles) by Author "Van de Peer, Yves"

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  • Divergence of active site motifs among different classes of Populus glutaredoxins results in substrate switches 
    Xu, Hui; Li, Zhen; Jiang, Peng-Fei; Zhao, Li; Qu, Chang; Van de Peer, Yves; Liu, Yan-Jing; Zeng, Qing-Yin (Wiley, 2022-04)
    Enzymes are essential components of all biological systems. The key characteristics of proteins functioning as enzymes are their substrate specificities and catalytic efficiencies. In plants, most genes encoding enzymes ...
  • Evolution of isoform-level gene expression patterns across tissues during lotus species divergence 
    Zhang, Yue; Yang, Xingyu; Van de Peer, Yves; Chen, Jinming; Marchal, Kathleen; Shi, Tao (Wiley, 2022-11)
    Both gene duplication and alternative splicing (AS) drive the functional diversity of gene products in plants, yet the relative contributions of the two key mechanisms to the evolution of gene function are largely unclear. ...
  • Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) 
    Qiao, Qin; Edger, Patrick P.; Xue, Li; Qiong, La; Lu, Jie; Zhang, Yichen; Cao, Qiang; Yocca, Alan E.; Platts, Adrian E.; Knapp, Steven J.; Van Montagu, Marc; Van de Peer, Yves; Lei, Jiajun; Zhang, Ticao (National Academy of Sciences, 2021-10)
    Strawberry (Fragaria spp.) has emerged as a model system for various fundamental and applied research in recent years. In total, the genomes of five different species have been sequenced over the past 10 y. Here, we report ...
  • The genome of Corydalis reveals the evolution of benzylisoquinoline alkaloid biosynthesis in Ranunculales 
    Xu, Zhichao; Li, Zhen; Ren, Fengming; Gao, Ranran; Wang, Zhengfan; Zhang, Jinlan; Zhao, Tao; Ma, Xiao; Pu, Xiangdong; Xin, Tianyi; Rombauts, Stephane; Sun, Wei; Van de Peer, Yves; Chen, Shilin; Song, Jingyuan (Wiley, 2022-07)
    Species belonging to the order Ranunculales have attracted much attention because of their phylogenetic position as a sister group to all other eudicot lineages and their ability to produce unique yet diverse benzylisoquinoline ...
  • The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences 
    Fang, Yuhan; Qin, Xing; Liao, Qinggang; Du, Ran; Luo, Xizhi; Zhou, Qian; Li, Zhen; Chen, Hengchi; Jin, Wanting; Yuan, Yaning; Sun, Pengbo; Zhang, Rui; Zhang, Jiao; Wang, Li; Cheng, Shifeng; Yang, Xueyong; Yan, Yuehong; Zhang, Xingtan; Zhang, Zhonghua; Bai, Shunong; Van de Peer, Yves; Lucas, William John; Huang, Sanwen; Yan, Jianbin (Nature Research, 2022-09)
    Euphyllophytes encompass almost all extant plants, including two sister clades, ferns and seed plants. Decoding genomes of ferns is the key to deep insight into the origin of euphyllophytes and the evolution of seed plants. ...
  • Haplotype-resolved genome assembly and allele-specific gene expression in cultivated ginger 
    Cheng, Shi-Ping; Jia, Kai-Hua; Liu, Hui; Zhang, Ren-Gang; Li, Zhi-Chao; Zhou, Shan-Shan; Shi, Tian-Le; Ma, Ai-Chu; Yu, Cong-Wen; Gao, Chan; Cao, Guang-Lei; Zhao, Wei; Nie, Shuai; Guo, Jing-Fang; Jiao, Si-Qian; Tian, Xue-Chan; Yan, Xue-Mei; Bao, Yu-Tao; Yun, Quan-Zheng; Wang, Xin-Zhu; Porth, Ilga; El-Kassaby, Yousry A.; Wang, Xiao-Ru; Li, Zhen; Van de Peer, Yves; Mao, Jian-Feng (Springer Nature, 2021-08)
    Ginger (Zingiber officinale) is one of the most valued spice plants worldwide; it is prized for its culinary and folk medicinal applications and is therefore of high economic and cultural importance. Here, we present a ...
  • The neighborhood of the spike gene Is a hotspot for modular intertypic homologous and nonhomologous recombination in coronavirus genomes 
    Nikolaidis, Marios; Markoulatos, Panayotis; Van de Peer, Yves; Oliver, Stephen G.; Amoutzias, Grigorios D. (Oxford University Press, 2022-01)
    Coronaviruses (CoVs) have very large RNA viral genomes with a distinct genomic architecture of core and accessory open reading frames (ORFs). It is of utmost importance to understand their patterns and limits of homologous ...