Browsing Natural and Agricultural Sciences by Author "Yang, Huanming"

Browsing Natural and Agricultural Sciences by Author "Yang, Huanming"

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  • The Cycas genome and the early evolution of seed plants 
    Liu, Yang; Wang, Sibu; Li, Linzhou; Yang, Ting; Dong, Shanshan; Wei, Tong; Wu, Shengdan; Liu, Yongbo; Gong, Yiqing; Feng, Xiuyan; Ma, Jianchao; Chang, Guanxiao; Huang, Jinling; Yang, Yong; Wang, Hongli; Liu, Min; Xu, Yan; Liang, Hongping; Yu, Jin; Cai, Yuqing; Zhang, Zhaowu; Fan, Yannan; Mu, Weixue; Sahu, Sunil Kumar; Liu, Shuchun; Lang, Xiaoan; Yang, Leilei; Li, Na; Habib, Sadaf; Yang, Yongqiong; Lindstrom, Anders J.; Liang, Pei; Goffinet, Bernard; Zaman, Sumaira; Wegrzyn, Jill; Li, Dexiang; Liu, Jian; Cui, Jie; Sonnenschein, Eva C.; Wang, Xiaobo; Ruan, Jue; Xue, Jia-Yu; Shao, Zhu-Qing; Song, Chi; Fan, Guangyi; Li, Zhen; Zhang, Liangsheng; Liu, Jianquan; Liu, Zhong-Jian; Jiao, Yuannian; Wang, Xiao-Quan; Wu, Hong; Wang, Ertao; Lisby, Michael; Yang, Huanming; Wang, Jian; Liu, Xin; Xu, Xun; Li, Nan; Soltis, Pamela S.; Van de Peer, Yves; Soltis, Douglas E.; Gong, Xun; Liu, Huan; Zhang, Shouzhou (Nature Research, 2022-04-18)
    Cycads represent one of the most ancient lineages of living seed plants. Identifying genomic features uniquely shared by cycads and other extant seed plants, but not non-seed-producing plants, may shed light on the origin ...
  • Dense sampling of bird diversity increases power of comparative genomics 
    Feng, Shaohong; Stiller, Josefin; Deng, Yuan; Armstrong, Joel; Fang, Qi; Reeve, Andrew Hart; Xie, Duo; Chen, Guangji; Guo, Chunxue; Faircloth, Brant C.; Petersen, Bent; Wang, Zongji; Zhou, Qi; Diekhans, Mark; Chen, Wanjun; Andreu-Sánchez, Sergio; Margaryan, Ashot; Howard, Jason Travis; Parent, Carole; George, Pacheco; Sinding, Mikkel-Holger S.; Puetz, Lara; Cavill, Emily; Ribeiro, Angela M.; Eckhart, Leopold; Fjeldsa, Jon; Hosner, Peter A.; Brumfield, Robb T.; Christidis, Les; Bertelsen, Mads F.; Sicheritz-Ponten, Thomas; Tietze, Dieter Thomas; Robertson, Bruce C.; Song, Gang; Borgia, Gerald; Claramunt, Santiago; Lovette, Irby J.; Cowen, Saul J.; Njoroge, Peter; Dumbacher, John Philip; Ryder, Oliver A.; Fuchs, Jerome; Bunce, Michael; Burt, David W.; Cracraft, Joel; Meng, Guanliang; Hackett, Shannon J.; Ryan, Peter G.; Jonsson, Knud Andreas; Jamieson, Ian G.; Da Fonseca, Rute R.; Braun, Edward L.; Houde, Peter; Mirarab, Siavash; Suh, Alexander; Hansson, Bengt; Ponnikas, Suvi; Sigeman, Hanna; Stervander, Martin; Frandsen, Paul B.; Van der Zwan, Henriette; Van der Sluis, Rencia; Visser, Carina; Balakrishnan, Christopher N.; Clark, Andrew G.; Fitzpatrick, John W.; Bowman, Reed; Chen, Nancy; Cloutier, Alison; Sackton, Timothy B.; Edwards, Scott V.; Foote, Dustin J.; Shakya, Subir B.; Sheldon, Frederick H.; Vignal, Alain; Soares, Andre E.R.; Shapiro, Beth; González-Solis, Jacob; Ferrer-Obiol, Joan; Rozas, Julio; Riutort, Marta; Tigano, Anna; Friesen, Vicki; Dalen, Love; Urrutia, Araxi O.; Szekely, Tamas; Liu, Yang; Campana, Michael G.; Corvelo, Andre; Fleischer, Robert C.; Rutherford, Kim M.; Gemmell, Neil J.; Dussex, Nicolas; Mouritsen, Henrik; Thiele, Nadine; Delmore, Kira; Liedvogel, Miriam; Franke, Andre; Hoeppner, Marc P.; Krone, Oliver; Fudickar, Adam M.; Mila, Borja; Ketterson, Ellen D.; Fidler, Andrew Eric; Friis, Guillermo; Parody-Merino, Angela M.; Battley, Phil F.; Cox, Murray P.; Lima, Nicholas Costa Barroso; Prosdocimi, Francisco; Parchman, Thomas Lee; Schlinger, Barney A.; Loiselle, Bette A.; Blake, John G.; Lim, Haw Chuan; Day, Lainy B.; Fuxjager, Matthew J.; Baldwin, Maude W.; Braun, Michael J.; Wirthlin, Morgan; Dikow, Rebecca B.; Ryder, T. Brandt; Camenisch, Glauco; Keller, Lukas F.; DaCosta, Jeffrey M.; Hauber, Mark E.; Louder, Matthew I.M.; Witt, Christopher C.; McGuire, Jimmy A.; Mudge, Joann; Megna, Libby C.; Carling, Matthew D.; Wang, Biao; Taylor, Scott A.; Del-Rio, Glaucia; Aleixo, Alexandre; Vasconcelos, Ana Tereza Ribeiro; Mello, Claudio V.; Weir, Jason T.; Haussler, David; Li, Qiye; Yang, Huanming; Wang, Jian; Lei, Fumin; Rahbek, Carsten; Gilbert, M. Thomas P.; Graves, Gary R.; Jarvis, Erich D.; Paten, Benedict; Zhang, Guojie (Nature Research, 2020-11-12)
    Whole-genome sequencing projects are increasingly populating the tree of life and characterizing biodiversity1–4. Sparse taxon sampling has previously been proposed to confound phylogenetic inference5, and captures only ...
  • The draft genomes of five agriculturally important African orphan crops 
    Chang, Yue; Liu, Huan; Liu, Min; Liao, Xuezhu; Sahu, Sunil Kumar; Fu, Yuan; Song, Bo; Cheng, Shifeng; Kariba, Robert; Muthemba, Samuel; Hendre, Prasad S.; Mayes, Sean; Ho, Wai Kuan; Yssel, A.E.J. (Anna); Kendabie, Presidor; Wang, Sibo; Li, Linzhou; Muchugi, Alice; Jamnadass, Ramni; Lu, Haorong; Peng, Shufeng; Van Deynze, Allen; Simons, Anthony; Yana-Shapiro, Howard; Van de Peer, Yves; Xu, Xun; Yang, Huanming; Wang, Jian; Liu, Xin (Oxford University Press, 2019)
    BACKGROUND : The expanding world population is expected to double the worldwide demand for food by 2050. Eighty-eight percent of countries currently face a serious burden of malnutrition, especially in Africa and south ...
  • Draft genomes of two artocarpus plants, jackfruit (A. heterophyllus) and breadfruit (A. altilis) 
    Sahu, Sunil Kumar; Liu, Min; Yssel, A.E.J. (Anna); Kariba, Robert; Muthemba, Samuel; Jiang, Sanjie; Song, Bo; Hendre, Prasad S.; Muchugi, Alice; Jamnadass, Ramni; Kao, Shu-Min; Featherston, Jonathan; Zerega, Nyree J. C.; Xu, Xun; Yang, Huanming; Van Deynze, Allen; Van de Peer, Yves; Liu, Xin; Liu, Huan (MDPI, 2020)
    Two of the most economically important plants in the Artocarpus genus are jackfruit (A. heterophyllus Lam.) and breadfruit (A. altilis (Parkinson) Fosberg). Both species are long-lived trees that have been cultivated for ...
  • The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants 
    Li, Linzhou; Wang, Sibo; Wang, Hongli; Sahu, Sunil Kumar; Marin, Birger; Li, Haoyuan; Xu, Yan; Liang, Hongping; Li, Zhen; Cheng, Shifeng; Reder, Tanja; Cebi, Zehra; Wittek, Sebastian; Petersen, Morten; Melkonian, Barbara; Du, Hongli; Yang, Huanming; Wang, Jian; Wong, Gane Ka-Shu; Xu, Xun; Liu, Xin; Van de Peer, Yves; Melkonian, Michael; Liu, Huan (Nature Research, 2020-09)
    Genome analysis of the pico-eukaryotic marine green alga Prasinoderma coloniale CCMP 1413 unveils the existence of a novel phylum within green plants (Viridiplantae), the Prasinodermophyta, which diverged before the split ...
  • Genome of wild olive and the evolution of oil biosynthesis 
    Unver, Turgay; Wu, Zhangyan; Sterck, Lieven; Turktas, Mine; Lohaus, Rolf; Li, Zhen; Yang, Ming; He, Lijuan; Deng, Tianquan; Javier Escalante; Llorens, Carlos; Roig, Francisco J.; Parmaksiz, Iskender; Dundar, Ekrem; Xie, Fuliang; Zhang, Baohong; lpek, Arif; Uranbey, Serkan; Erayman, Mustafa; llhan, Emre; Badad, Oussama; Ghazal, Hassan; Lightfoot, David A.; Kasarla, Pavan; Colantonio, Vincent; Tombuloglu, Huseyin; Hernandez, Pilar; Mete, Nurengin; Cetin, Oznur; Van Montagu, Marc; Yang, Huanming; Gao, Qiang; Dorado, Gabriel; Van de Peer, Yves (National Academy of Sciences, 2017-10)
    Here we present the genome sequence and annotation of the wild olive tree (Olea europaea var. sylvestris), called oleaster, which is considered an ancestor of cultivated olive trees. More than 50,000 protein-coding genes ...
  • Genomes of early-diverging streptophyte algae shed light on plant terrestrialization 
    Wang, Sibo; Li, Linzhou; Li, Haoyuan; Sahu, Sunil Kumar; Wang, Hongli; Xu, Yan; Xian, Wenfei; Song, Bo; Liang, Hongping; Cheng, Shifeng; Chang, Yue; Song, Yue; Cebi, Zehra; Wittek, Sebastian; Reder, Tanja; Peterson, Morten; Yang, Huanming; Wang, Jian; Melkonian, Barbara; Van de Peer, Yves; Xu, Xun; Wong, Gane Ka-Shu; Melkonian, Michael; Liu, Huan; Liu, Xin (Nature Research, 2020-02)
    Mounting evidence suggests that terrestrialization of plants started in streptophyte green algae, favoured by their dual existence in freshwater and subaerial/terrestrial environments. Here, we present the genomes of ...
  • Genomes shed light on the evolution of Begonia, a mega-diverse genus 
    Li, Lingfei; Chen, Xiaoli; Fang, Dongming; Dong, Shanshan; Guo, Xing; Li, Na; Campos-Dominguez, Lucia; Wang, Wenguang; Liu, Yang; Lang, Xiaoan; Peng, Yang; Tian, Daike; Thomas, Daniel C.; Mu, Weixue; Liu, Min; Wu, Chenyu; Yang, Ting; Zhang, Suzhou; Yang, Leilei; Yang, Jianfen; Liu, Zhong-Jian; Zhang, Liangsheng; Zhang, Xingtan; Chen, Fei; Jiao, Yuannian; Guo, Yalong; Hughes, Mark; Wang, Wei; Liu, Xiaofei; Zhong, Chunmei; Li, Airong; Sahu, Sunil Kumar; Yang, Huanming; Wu, Ernest; Sharbrough, Joel; Lisby, Michael; Liu, Xin; Xu, Xun; Soltis, Douglas E.; Van de Peer, Yves; Kidner, Catherine; Zhang, Shouzhou; Liu, Huan (Wiley, 2022-04)
    Clarifying the evolutionary processes underlying species diversification and adaptation is a key focus of evolutionary biology. Begonia (Begoniaceae) is one of the most species-rich angiosperm genera with c. 2000 species, ...
  • Genomic and transcriptomic analysis unveils population evolution and development of pesticide resistance in fall armyworm Spodoptera frugiperda 
    Gui, Furong; Lan, Tianming; Zhao, Yue; Guo, Wei; Dong, Yang; Fang, Dongming; Liu, Huan; Li, Haimeng; Wang, Hongli; Hao, Ruoshi; Cheng, Xiaofang; Li, Yahong; Yang, Pengcheng; Sahu, Sunil Kumar; Chen, Yaping; Cheng, Le; He, Shuqi; Liu, Ping; Fan, Guangyi; Lu, Haorong; Hu, Guohai; Dong, Wei; Chen, Bin; Jiang, Yuan; Zhang, Yongwei; Xu, Hanhong; Lin, Fei; Slippers, Bernard; Postma, Alisa; Jackson, Matthew; Abate, Birhan Addisie; Tesfaye, Kassahun; Demie, Aschalew Lemma; Bayeleygne, Meseret Destaw; Degefu, Dawit Tesfaye; Chen, Feng; Kuria, Paul K.; Kinyua, Zachary M.; Liu, Tong-Xian; Yang, Huanming; Huang, Fangneng; Liu, Xin; Sheng, Jun; Kang, Le (SpringerOpen, 2022-07)
    The fall armyworm (FAW), Spodoptera frugiperda, is a destructive pest native to America and has recently become an invasive insect pest in China. Because of its rapid spread and great risks in China, understanding of FAW ...