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Browsing Research Articles (Bioinformatics & Computational Biology Unit) by Type "Article"

Now showing items 1-7 of 7

Bacterial profiling of Haemonchus contortus gut microbiome infecting Dohne Merino sheep in South Africa

Mafuna, Thendo; Soma, P.; Tsotetsi‑Khambule, A.M.; Hefer, C.A.; Muchadeyi, F.C.; Thekisoe, O.M.M.; Pierneef, Rian Ewald (Nature Research, 2021-03)

A metagenomic approach was used to study the gut microbiome of Haemonchus contortus feld strains and that of its predilection site, the abomasum of Dohne Merino sheep. The abomasum contents and H. contortus were collected ...
Comparative genomics of Listeria species recovered from meat and food processing facilities

Mafuna, T.; Matle, I.; Magwedere, K.; Pierneef, Rian Ewald; Reva, Oleg N. (American Society for Microbiology, 2022-09-06)

Listeria species (spp.) are contaminants that can survive in food, on equipment, and on food processing premises if appropriate hygiene measures are not used. Homologous stress tolerance genes, virulence gene clusters such ...
Diversity analysis of southern African Artemisia afra using a single nucleotide polymorphism derived from diversity arrays

Sedibe, Moosa Mahmood; Rafiri, Matumelo A.; Dikane, Goitsemang Mahlomola Hendry; Achilonu, Matthew Chilaka; Nkosi, S'busiso Mfan'vele; Ngubane, Xolile Veronica; Pierneef, Rian (Elsevier, 2024-02)

Artemisia afra is an aromatic shrub used as a herbal remedy in southern Africa for various disorders, including coughs, colds, influenza, and, most notably, for the prophylaxis and treatment of Plasmodium falciparum ...
Draft genome sequence of Thermoactinomyces sp. strain AS95 isolated from a Sebkha in Thamelaht, Algeria

Bezuidt, Keoagile Ignatius Oliver; Gomri, Mohamed A.; Pierneef, Rian Ewald; Van Goethem, Marc W.; Kharroub, Karima; Cowan, Don A.; Makhalanyane, Thulani Peter (Genomic Standards Consortium, 2016-09-09)

The members of the genus Thermoactinomyces are known for their protein degradative capacities. Thermoactinomyces sp. strain AS95 is a Gram-positive filamentous bacterium, isolated from moderately saline water in the ...
Phylogenetic analyses of Salmonella detected along the broiler production chain in Trinidad and Tobago

Khan, Anisa S.; Pierneef, Rian Ewald; Gonzalez-Escalona, Narjol; Maguire, Meghan; Georges, Karla; Abebe, Woubit; Adesiyun, Abiodun Adewale (Elsevier, 2023-02)

This study was conducted to determine the phylogenies of Salmonella strains isolated from cross-sectional studies conducted at hatcheries, broiler farms, processing plants, and retail outlets (broiler production chain) in ...
The SeqWord Genome Browser : an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage

Ganesan, Hamilton; Rakitianskaia, A.S. (Anastassia Sergeevna); Davenport, Colin F.; Tummler, Burkhard; Reva, Oleg N. (BioMed Central, 2008-08)

BACKGROUND: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information for large scale sequence analysis and ...
TULIP software and web server : automatic classification of protein sequences based on pairwise comparisons and Z-value statistics

Grando, Delphine; Ortet, Philippe; Joubert, Fourie; Marechal, Eric; Bastien, Olivier (Bentham Science, 2009-03)

A configuration space of homologous protein sequences (or CSHP) has been recently constructed based on pairwise comparisons, with probabilities deduced from Z-value statistics (Monte Carlo methods applied to pairwise ...

Now showing items 1-7 of 7

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