Browsing Research Articles (Genetics) by UP Author "Venter, S.N. (Stephanus Nicolaas)"

Browsing Research Articles (Genetics) by UP Author "Venter, S.N. (Stephanus Nicolaas)"

Sort by: Order: Results:

  • Palmer, Marike; Steenkamp, Emma Theodora; Blom, Jochen; Hedlund, Brian P.; Venter, S.N. (Stephanus Nicolaas) (Microbiology Society, 2020-04)
    In prokaryotic taxonomy, a set of criteria is commonly used to delineate species. These criteria are generally based on cohesion at the phylogenetic, phenotypic and genomic levels. One such criterion shown to have promise ...
  • Beukes, Chrizelle Winsie; Boshoff, Francois S.; Phalane, Francina L.; Hassen, Ahmed Idris; Le Roux, Marianne M.; Stepkowski, Tomasz; Venter, S.N. (Stephanus Nicolaas); Steenkamp, Emma Theodora (Frontiers Media, 2019-06-04)
    Vachellia karroo (formerly Acacia karroo) is a wide-spread legume species indigenous to southern Africa. Little is known regarding the identity or diversity of rhizobia that associate with this plant in its native range ...
  • Avontuur, Juanita Rayleen; Palmer, Marike; Beukes, Chrizelle Winsie; Chan, Wai Yin; Tasiya, Taponeswa; Van Zyl, Elritha; Coetzee, Martin Petrus Albertus; Stepkowski, Tomasz; Venter, S.N. (Stephanus Nicolaas); Steenkamp, Emma Theodora (Elsevier, 2022-02)
    Please read abstract in the article.
  • Wingfield, Brenda D.; Steenkamp, Emma Theodora; Santana, Quentin C.; Coetzee, Martin Petrus Albertus; Bam, Stefan; Barnes, Irene; Beukes, Chrizelle Winsie; Chan, Wai Yin; De Vos, Lieschen; Fourie, Gerda; Friend, Melanie; Gordon, Thomas R. (Tom); Herron, Darryl A.; Holt, Carson; Korf, Ian; Kvas, Marija; Martin, Simon H.; Mlonyeni, X.O.M. (Xolile Osmond Mnyamezeli); Naidoo, Kershney; Phasha, Mmatshepho Malekgale; Postma, Alisa; Reva, Oleg N.; Roos, Heidi; Simpson, M.C. (Melissa Claire); Slinski, Stephanie; Slippers, Bernard; Sutherland, Rene; Van der Merwe, Nicolaas Albertus (Albie); Van der Nest, Magrieta Aletta; Venter, S.N. (Stephanus Nicolaas); Wilken, Pieter Markus; Yandell, Mark; Zipfel, Renate; Wingfield, Michael J. (Academy of Science of South Africa, 2012-01-25)
    Some of the most significant breakthroughs in the biological sciences this century will emerge from the development of next generation sequencing technologies. The ease of availability of DNA sequence made possible through ...
  • Palmer, Marike; Steenkamp, Emma Theodora; Coetzee, Martin Petrus Albertus; Blom, Jochen; Venter, S.N. (Stephanus Nicolaas) (Frontiers Media, 2018-02-06)
    Bacteriologists have strived toward attaining a natural classification system based on evolutionary relationships for nearly 100 years. In the early twentieth century it was accepted that a phylogeny-based system would ...
  • Avontuur, Juanita Rayleen; Palmer, Marike; Beukes, Chrizelle Winsie; Chan, Wai Yin; Coetzee, Martin Petrus Albertus; Blom, Jochen; Stępkowski, Tomasz; Kyrpides, Nikos C.; Woyke, Tanja; Shapiro, Nicole; Whitman, William B.; Venter, S.N. (Stephanus Nicolaas); Steenkamp, Emma Theodora (Elsevier, 2019-07)
    Bradyrhizobium is thought to be the largest and most diverse rhizobial genus, but this is not reflected in the number of described species. Although it was one of the first rhizobial genera recognised, its taxonomy remains ...
  • Beukes, Chrizelle Winsie; Venter, S.N. (Stephanus Nicolaas); Steenkamp, Emma Theodora (Wiley, 2021-03)
    Legumes in the Fynbos vegetation of the Western Cape of South Africa have emerged as candidates for domestication, particularly for their adaptation to acidic and infertile soils. However, South African rhizobia have ...
  • Potgieter, Sarah; Dai, Zihan; Venter, S.N. (Stephanus Nicolaas); Sigudu, Makhosazana; Pinto, Ameet J. (American Society for Microbiology, 2020-04)
    Ammonia availability due to chloramination can promote the growth of nitrifying organisms, which can deplete chloramine residuals and result in operational problems for drinking water utilities. In this study, we used a ...
  • Palmer, Marike; Steenkamp, Emma Theodora; Coetzee, Martin Petrus Albertus; Avontuur, Juanita Rayleen; Chan, Wai Yin; Van Zyl, Elritha; Blom, Jochen; Venter, S.N. (Stephanus Nicolaas) (Microbiology Society, 2018-04)
    The Erwiniaceae contain many species of agricultural and clinical importance. Although relationships among most of the genera in this family are relatively well resolved, the phylogenetic placement of several taxa remains ...
  • Agarwal, Gaurav; Choudhary, Divya; Stice, Shaun P.; Myers, Brendon K.; Gitaitis, Ronald D.; Venter, S.N. (Stephanus Nicolaas); Kvitko, Brian H.; Dutta, Bhabesh (Frontiers Media, 2021-08-19)
    Pantoea ananatis, a gram negative and facultative anaerobic bacterium is a member of a Pantoea spp. complex that causes center rot of onion, which significantly affects onion yield and quality. This pathogen does not ...
  • Beukes, Chrizelle Winsie; Steenkamp, Emma Theodora; Van Zyl, Elritha; Avontuur, Juanita Rayleen; Chan, Wai Yin; Hassen, Ahmed Idris; Palmer, Marike; Mthombeni, Lunghile S.; Phalane, Francina L.; Sereme, T. Karabo; Venter, S.N. (Stephanus Nicolaas) (Springer, 2019-09)
    Please read abstract in the article.
  • Mavima, Lazarus; Beukes, Chrizelle Winsie; Palmer, Marike; De Meyer, Sofie E.; James, Euan K.; Maluk, Marta; Gross, Eduardo; Junior, Fabio Bueno dos Reis; Avontuur, Juanita Rayleen; Chan, Wai Yin; Venter, S.N. (Stephanus Nicolaas); Steenkamp, Emma Theodora (Elsevier, 2021-01)
    Please read abstract in the article.
  • De Maayer, Pieter; Aliyu, Habibu; Vikram, Surendra; Blom, Jochem; Duffy, Brion; Cowan, Don A.; Smits, Theo H.M.; Venter, S.N. (Stephanus Nicolaas); Coutinho, Teresa A. (Frontiers Research Foundation, 2017-09-14)
    Pantoea ananatis is ubiquitously found in the environment and causes disease on a wide range of plant hosts. By contrast, its sister species, Pantoea stewartii subsp. stewartii is the host-specific causative agent of the ...
  • Palmer, Marike; Venter, S.N. (Stephanus Nicolaas); Coetzee, Martin Petrus Albertus; Steenkamp, Emma Theodora (Elsevier, 2019-03)
    Many gene flow barriers associated with genetic isolation during eukaryotic species divergence, are lacking in prokaryotes. In these organisms the processes associated with horizontal gene transfer (HGT) may provide both ...
  • Potgieter, Sarah; Dai, Zihan; Havenga, Minette; Vosloo, Solize; Sigudu, Makhosazana; Pinto, Ameet; Venter, S.N. (Stephanus Nicolaas) (American Chemical Society, 2021-06)
    Understanding whether the spatiotemporal dynamics of the drinking water microbiome are reproducible in full-scale drinking water systems is an important step in devising engineering strategies for effectively managing and ...
  • Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland; Hugenholtz, Philip; Kampfer, Peter; Konstantinidis, Konstantinos T.; Lane, Christopher E.; Papke, R. Thane; Parks, Donovan H.; Rossello-Mora, Ramon; Stott, Matthew B.; Sutcliffe, Iain C.; Thrash, J. Cameron; Venter, S.N. (Stephanus Nicolaas); Whitman, William B.; Acinas, Silvia G.; Amann, Rudolf I.; Anantharaman, Karthik; Armengaud, Jean; Baker, Brett J.; Barco, Roman A.; Bode, Helge B.; Boyd, Eric S.; Brady, Carrie Louise; Carini, Paul; Chain, Patrick S.G.; Colman, Daniel R.; DeAngelis, Kristen M.; De los Rios, Maria Asuncion; Estrada-de los Santos, Paulina; Dunlap, Christopher A.; Eisen, Jonathan A.; Emerson, David; Ettema, Thijs J.G.; Eveillard, Damien; Girguis, Peter R.; Hentschel, Ute; Hollibaugh, James T.; Hug, Laura A.; Inskeep, William P.; Ivanova, Elena P.; Klenk, Hans-Peter; Li, Wen-Jun; Lloyd, Karen G.; Loffler, Frank E.; Makhalanyane, Thulani Peter; Moser, Duane P.; Nunoura, Takuro; Palmer, Marike; Parro, Victor; Pedrós-Alio, Carlos; Probst, Alexander J.; Smits, Theo H.M.; Steen, Andrew D.; Steenkamp, Emma Theodora; Spang, Anja; Stewart, Frank J.; Tiedje, James M.; Vandamme, Peter; Wagner, Michael; Wang, Feng-Ping; Yarza, Pablo; Hedlund, Brian P.; Reysenbach, Anna-Louise (Nature Research, 2020-06-08)
    The assembly of single-amplified genomes (SAGs) and metagenome-assembled genomes (MAGs) has led to a surge in genome-based discoveries of members affiliated with Archaea and Bacteria, bringing with it a need to develop ...
  • Konstantinidis, Konstantinos T.; Viver, Tomeu; Conrad, Roth E.; Venter, S.N. (Stephanus Nicolaas); Rossello-Mora, Ramon (Elsevier, 2022-02)
    Microbial communities often harbor overwhelming species and gene diversity, making it challenging to determine the important units to study this diversity. We argue that the reduced, and thus tractable, microbial diversity ...
  • Estrada-de los Santos, Paulina; Palmer, Marike; Steenkamp, Emma Theodora; Maluk, Marta; Beukes, Chrizelle Winsie; Hirsch, Ann M.; James, Euan K.; Venter, S.N. (Stephanus Nicolaas) (Springer, 2019-11)
    “Burkholderia dabaoshanensis” was described in 2012. Although the name was effectively published, it could not be validly published, because the description provided in the original paper did not comply with the Rule 27 ...
  • Bophela, Khumbuzile Nokwanda; Venter, S.N. (Stephanus Nicolaas); Wingfield, Michael J.; Duran, A.; Tarigan, Marthin; Coutinho, Teresa A. (Springer, 2019-11)
    Leaf and shoot blight, often accompanied by die-back symptoms, on Eucalyptus species, hybrids and clones have been reported from a number of countries. More than one bacterial species has been found to cause these symptoms. ...