Browsing Research Articles (Genetics) by Title

Browsing Research Articles (Genetics) by Title

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  • Draft genome assembly of the false spider mite Brevipalpus yothersi 
    Navia, Denise; Novelli, Valdenice M.; Rombauts, Stephane; Freitas-Astua, Juliana; Santos de Mendonca, Renata; Nunes, Maria Andreia; Machado, Marcos A.; Lin, Yao-Cheng; Le, Phuong; Zhang, Zaichao; Grbic, Miodrag; Wybouw, Nicky; Breeuwer, Johannes A. J.; Van Leeuwen, Thomas; Van de Peer, Yves (American Society for Microbiology, 2019-02-07)
    The false spider mite Brevipalpus yothersi infests a broad host plant range and has become one of the most economically important species within the genus Brevipalpus. This phytophagous mite inflicts damage by both feeding ...
  • Draft genome assembly of the poultry red mite, Dermanyssus gallinae 
    Burgess, Stewart T.G.; Bartley, Kathryn; Nunn, Francesca; Wright, Harry W.; Hughes, Margaret; Gemmell, Matthew; Haldenby, Sam; Paterson, Steve; Rombauts, Stephane; Tomley, Fiona M.; Blake, Damer P.; Pritchard, James; Schicht, Sabine; Strube, Christina; Oines, Oines; Van Leeuwen, Thomas; Van de Peer, Yves; Nisbet, Alasdair J. (American Society for Microbiology, 2018-11-08)
    The poultry red mite, Dermanyssus gallinae, is a major worldwide concern in the egg-laying industry. Here, we report the first draft genome assembly and gene prediction of Dermanyssus gallinae, based on combined PacBio ...
  • Draft genome assembly of the sheep scab mite, Psoroptes ovis 
    Burgess, Stewart T.G.; Bartley, Kathryn; Marr, Edward J.; Wright, Harry W.; Weaver, Robert J.; Prickett, Jessica C.; Hughes, Margaret; Haldenby, Sam; Thi Le, Phuong; Rombauts, Stephane; Van Leeuwen, Thomas; Van de Peer, Yves; Nisbet, Alasdair J. (American Society for Microbiology, 2018-04-19)
    Sheep scab, caused by infestation with Psoroptes ovis, is highly contagious, results in intense pruritus, and represents a major welfare and economic concern. Here, we report the first draft genome assembly and gene ...
  • Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips 
    Wingfield, Brenda D.; Berger, David Kenneth; Steenkamp, Emma Theodora; Lim, Hye-Jin; Duong, Tuan A.; Bluhm, Burton H.; De Beer, Z. Wilhelm; De Vos, Lieschen; Fourie, Gerda; Naidoo, Kershney; Olivier, Nicholas Abraham; Lin, Yao-Cheng; Van de Peer, Yves; Joubert, Fourie; Crampton, Bridget Genevieve; Swart, Velushka; Soal, Nicole Christine; Tatham, Catherine; Van der Nest, Magrieta Aletta; Van der Merwe, Nicolaas Albertus (Albie); Van Wyk, Stephanie; Wilken, Pieter Markus; Wingfield, Michael J. (International Mycological Association, 2017-11-21)
    The genomes of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens, and Ophiostoma ips are presented in this genome announcement. Three of these genomes are from plant pathogens and ...
  • The draft genome of Deladenus siricidicola 
    Postma, Alisa; Mlonyeni, X.O.M. (Xolile Osmond Mnyamezeli); Clasen, Frederick Johannes; Joubert, Fourie; Slippers, Bernard (Exeley, 2019)
    The nematode Deladenus siricidicola is used as biological control agent against the invasive woodwasp Sirex noctilio, a serious invasive pest of Pinus plantations globally. The draft genome of this ecologically ...
  • Draft genome sequence of a “Candidatus Phytoplasma asteris”-related strain (aster yellows, subgroup 16SrI-B) from South Africa 
    Coetzee, Beatrix; Douglas-Smit, Nicoleen; Maree, Hans J.; Burger, Johan T.; Pietersen, Gerhard; Kruger, Kerstin (American Society for Microbiology, 2019-04)
    Here, we report the draft genome sequence of a phytoplasma discovered in grapevine. The genome size is 600,116 nucleotides (nt), with 597 predicted open reading frames. It is most similar to a maize bushy stunt phytoplasma ...
  • Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata 
    Wingfield, Brenda D.; Bills, Gerald F.; Dong, Yang; Huang, Wenli; Nel, Wilma Janine; Swalarsk-Parry, Benedicta S.; Vaghefi, Niloofar; Wilken, Pieter Markus; An, Zhiqiang; De Beer, Z. Wilhelm; De Vos, Lieschen; Chen, Li; Duong, Tuan A.; Gao, Yun; Hammerbacher, Almuth; Kikkert, Julie R.; Li, Yan; Li, Huiying; Li, Kuan; Li, Qiang; Liu, Xingzhong; Ma, Xiao; Naidoo, Kershney; Pethybridge, Sarah J.; Sun, Jingzu; Steenkamp, Emma Theodora; Van der Nest, Magrieta Aletta; Van Wyk, Stephanie; Wingfield, Michael J.; Xiong, Chuan; Yue, Qun; Zhang, Xiaoling (International Mycological Association, 2018-06-11)
    Draft genomes of the species Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, ...
  • Draft genome sequence of Microbacterium sp. Strain CH12i, isolated from shallow groundwater in Cape Hallett, Antarctica 
    Ferreras, Eloy R.; De Maayer, Pieter; Makhalanyane, Thulani P.; Guerrero, Leandro D.; Aislabie, Jackie M.; Cowan, Don A. (American Society for Microbiology, 2014-07)
    The Antarctic continent is largely covered by an expansive ice sheet, but it harbors diverse terrestrial and aquatic habitats in the coastal ice-free continental margins. Here we present the draft genome of Microbacterium ...
  • Draft genome sequence of the Antarctic polyextremophile Nesterenkonia sp. strain AN1 
    Aliyu, Habibu; De Maayer, Pieter; Rees, Jasper; Tuffin, Marla I.; Cowan, Don A. (American Society for Microbiology, 2014-03)
    Nesterenkonia sp. strain AN1 was isolated from Antarctic soil and is a polyextremophile, being tolerant of low temperatures, high salt concentrations, and high alkalinity. Here we report the draft genome sequence of this strain.
  • Draft genome sequence of the aromatic hydrocarbon-degrading bacterium Sphingobium sp. strain Ant17, isolated from Antarctic soil 
    Adriaenssens, Evelien M.; Guerrero, Leandro D.; Makhalanyane, Thulani P.; Aislabie, Jackie M.; Cowan, Don A. (American Society for Microbiology, 2014-03)
    Here, we present the draft genome sequence of Sphingobium sp. strain Ant17, an aromatic hydrocarbon-degrading bacterium that was isolated from Antarctic oil-contaminated soil. An analysis of this genome can lead to insights ...
  • Draft genome sequence of Thermoactinomyces sp. strain AS95 isolated from a Sebkha in Thamelaht, Algeria 
    Bezuidt, Keoagile Ignatius Oliver; Gomri, Mohamed A.; Pierneef, Rian Ewald; Van Goethem, Marc W.; Kharroub, Karima; Cowan, Don A.; Makhalanyane, Thulani P. (Genomic Standards Consortium, 2016-09-09)
    The members of the genus Thermoactinomyces are known for their protein degradative capacities. Thermoactinomyces sp. strain AS95 is a Gram-positive filamentous bacterium, isolated from moderately saline water in the ...
  • Draft genome sequence of Williamsia sp. strain D3, isolated from the Darwin Mountains, Antarctica 
    Guerrero, Leandro D.; Makhalanyane, Thulani P.; Aislabie, Jackie M.; Cowan, Don A. (American Society for Microbiology, 2014-01-23)
    Actinobacteria are the dominant taxa in Antarctic desert soils. Here, we describe the first draft genome of a member of the genus Williamsia (strain D3) isolated from Antarctic soil. The genome of this psychrotolerant ...
  • Draft genome sequences of Ambrosiella cleistominuta, Cercospora brassicicola, C. citrullina, Physcia stellaris, and Teratosphaeria pseudoeucalypti 
    Wilken, Pieter Markus; Aylward, Janneke; Chand, Ramesh; Lane, Frances Alice; Sinha, Shagun; Ametrano, Claudio; Distefano, Isabel; Divakar, Pradeep K.; Duong, Tuan A.; Huhndorf, Sabine; Kharwar, Ravindra N.; Lumbsch, H. Thorsten; Navathe, Sudhir; Pérez, Carlos A.; Ramírez-Berrutti, Nazaret; Sharma, Rohit; Sun, Yukun; Wingfield, Brenda D.; Wingfield, Michael J. (BioMed Central, 2020)
    Draft genomes of the fungal species Ambrosiella cleistominuta, Cercospora brassicicola, C. citrullina, Physcia stellaris, and Teratosphaeria pseudoeucalypti are presented. Physcia stellaris is an important lichen forming ...
  • Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata 
    Wingfield, Brenda D.; Ades, Peter K.; Al-Naemi, Fatima A.; Beirn, Lisa A.; Bihon, Wubetu; Crouch, Jo Anne; De Beer, Z. Wilhelm; De Vos, Lieschen; Duong, Tuan A.; Fields, Christopher J.; Fourie, Gerda; Kanzi, Aquillah M.; Malapi-Wight, Martha; Pethybridge, Sarah J.; Radwan, Osman; Rendon, Gloria; Slippers, Bernard; Santana, Quentin C.; Steenkamp, Emma Theodora; Taylor, Paul W.J.; Vaghefi, Niloofar; Van der Merwe, Nicolaas Albertus (Albie); Veltri, Daniel; Wingfield, Michael J. (International Mycological Association, 2015-06-22)
    The genomes of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygami, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata are presented in this genome ...
  • Draft genome sequences of Diplodia sapinea, Ceratocystis manginecans, and Ceratocystis moniliformis 
    Van der Nest, Magrieta Aletta; Bihon, Wubetu; De Vos, Lieschen; Naidoo, Kershney; Roodt, Danielle; Rubagotti, Enrico; Slippers, Bernard; Steenkamp, Emma Theodora; Wilken, Pieter Markus; Wilson, Andrea M.; Wingfield, Michael J.; Wingfield, Brenda D. (International Mycological Association, 2014-06-19)
    The draft nuclear genomes of Diplodia sapinea, Ceratocystis moniliformis s. str., and C. manginecans are presented. Diplodia sapinea is an important shoot-blight and canker pathogen of Pinus spp., C. moniliformis is a ...
  • Draft genome sequences of five Calonectria species from Eucalyptus plantations in China, Celoporthe dispersa, Sporothrix phasma and Alectoria sarmentosa 
    Liu, FeiFei; Chen, ShuaiFei; Ferreira, Maria A.; Chang, Runlei; Sayari, Mohammad; Kanzi, Aquillah M.; Wingfield, Brenda D.; Wingfield, Michael J.; Pizarro, David; Crespo, Ana; Divakar, Pradeep K.; De Beer, Z. Wilhelm; Duong, Tuan A. (BioMed Central, 2019-12)
    Draft genome sequences of five Calonectria species [including Calonectria aciculata, C. crousiana, C. fujianensis, C. honghensis and C. pseudoturangicola], Celoporthe dispersa, Sporothrix phasma and Alectoria sarmentosa ...
  • Draft genome sequences of Fusarium xylarioides, Teratosphaeria gauchensis and T. zuluensis and genome annotation for Ceratocystis fimbriata 
    Wingfield, Brenda D.; Fourie, Arista; Simpson, Melissa Claire; Bushula-Njah, Vuyiswa; Aylward, Janneke; Barnes, Irene; Coetzee, Martin Petrus Albertus; Dreyer, Leanne Laurette; Duong, Tuan A.; Geiser, David M.; Roets, Francois; Steenkamp, Emma Theodora; Van der Nest, Magrieta Aletta; Van Heerden, Carel J.; Wingfield, Michael J. (International Mycological Association, 2019-09-13)
    Draft genomes of the fungal species Fusarium xylarioides, Teratosphaeria gauchensis and T. zuluensis are presented. In addition an annotation of the genome of Ceratocystis fimbriata is presented. Overall these genomes ...
  • Draft genome sequences of Geobacillus sp. Strains CAMR5420 and CAMR12739 
    De Maayer, Pieter; Williamson, Carolyn E.; Vennard, Christopher T.; Danson, Michael J.; Cowan, Don A. (American Society for Microbiology, 2014-05)
    Thermophilic Geobacillus spp. can efficiently hydrolyse hemicellulose polymers and are therefore of interest in biotechnological applications. Here we report the genomes of two hemicellulotyic strains, Geobacillus sp. ...
  • Draft genomes of Amanita jacksonii, Ceratocystis albifundus, Fusarium circinatum, Huntiella omanensis, Leptographium procerum, Rutstroemia sydowiana, and Sclerotinia echinophila 
    Van der Nest, Magrieta Aletta; Beirn, Lisa A.; Crouch, Jo Anne; Demers, Jill E.; De Beer, Z. Wilhelm; De Vos, Lieschen; Gordon, Thomas R. (Tom); Moncalvo, Jean-Marc; Naidoo, Kershney; Sanchez-Ramirez, Santiago; Roodt, Danielle; Santana, Quentin C.; Slinski, Stephanie; Stata, Matt; Taerum, Stephen J.; Wilken, Pieter Markus; Wilson, Andrea M.; Wingfield, Michael J.; Wingfield, Brenda D. (International Mycological Association, 2014-12-16)
    The genomes of fungi provide an important resource to resolve issues pertaining to their taxonomy, biology, and evolution. The genomes of Amanita jacksonii, Ceratocystis albifundus, a Fusarium circinatum variant, Huntiella ...
  • The draft genomes of five agriculturally important African orphan crops 
    Chang, Yue; Liu, Huan; Liu, Min; Liao, Xuezhu; Sahu, Sunil Kumar; Fu, Yuan; Song, Bo; Cheng, Shifeng; Kariba, Robert; Muthemba, Samuel; Hendre, Prasad S.; Mayes, Sean; Ho, Wai Kuan; Yssel, A.E.J. (Anna); Kendabie, Presidor; Wang, Sibo; Li, Linzhou; Muchugi, Alice; Jamnadass, Ramni; Lu, Haorong; Peng, Shufeng; Van Deynze, Allen; Simons, Anthony; Yana-Shapiro, Howard; Van de Peer, Yves; Xu, Xun; Yang, Huanming; Wang, Jian; Liu, Xin (Oxford University Press, 2019)
    BACKGROUND : The expanding world population is expected to double the worldwide demand for food by 2050. Eighty-eight percent of countries currently face a serious burden of malnutrition, especially in Africa and south ...