Browsing Research Articles (Microbiology and Plant Pathology) by Author "Haydon, Daniel Thomas"

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A Bayesian approach for inferring the dynamics of partially observed endemic infectious diseases from space-time-genetic data

Mollentze, Nardus; Nel, Louis Hendrik; Townsend, Sunny E.; Le Roux, Kevin; Hampson, Katie; Haydon, Daniel Thomas; Soubeyrand, Samuel (The Royal Society, 2014-05)

We describe a statistical framework for reconstructing the sequence of transmission events between observed cases of an endemic infectious disease using genetic, temporal and spatial information. Previous approaches to ...
Sequence-based prediction for vaccine strain selection and identification of antigenic variability in Foot-and-Mouth disease virus

Reeve, Richard; Blignaut, Belinda; Esterhuysen, Jan J.; Opperman, Pamela Anne; Matthews, Louise; Fry, Elizabeth E.; De Beer, T.A.P. (Tjaart Andries Petrus); Theron, Jacques; Rieder, Elizabeth; Vosloo, Wilna; O’Neill, Hester G.; Haydon, Daniel Thomas; Maree, Francois Frederick; Tanaka, Mark M. (Public Library of Science, 2010-12)

Identifying when past exposure to an infectious disease will protect against newly emerging strains is central to understanding the spread and the severity of epidemics, but the prediction of viral cross-protection remains ...

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