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Browsing Research Articles (Biochemistry) by Subject "Whole genome sequencing (WGS)"

Now showing items 1-7 of 7

Complete genome sequence and epigenetic profile of Bacillus velezensis UCMB5140 used for plant and crop protection in comparison with other plant-associated Bacillus strains

Reva, Oleg N.; Larisa, Safronova A.; Mwakilili, Aneth D.; Tibuhwa, Donatha; Lyantagaye, Sylvester; Chan, Wai Yin; Lutz, Stefanie; Ahrens, Christian H.; Vater, Joachim; Borriss, Rainer (Springer, 2020-09)

The application of biocontrol biopesticides based on plant growth–promoting rhizobacteria (PGPR), particularly members of the genus Bacillus, is considered a promising perspective to make agricultural practices sustainable ...
A de novo 2.2 Mb recurrent 17q23.1q23.2 deletion unmasks novel putative regulatory non-coding SNVs associated with lethal lung hypoplasia and pulmonary hypertension : a case report

Karolak, Justyna A.; Gambin, Tomasz; Honey, Engela M.; Slavik, Tomas; Popek, Edwina; Stankiewicz, Paweł (BioMed Central, 2020-03-06)

BACKGROUND : Application of whole genome sequencing (WGS) enables identification of non-coding variants that play a phenotype-modifying role and are undetectable by exome sequencing. Recently, non-coding regulatory single ...
Phylogenomic structure of Bacillus anthracis isolates in the Northern Cape Province, South Africa revealed novel single nucleotide polymorphisms

Lekota, Kgaugelo Edward; Hassim, Ayesha; Madoroba, Evelyn; Hefer, Charles A.; Van Heerden, Henriette (Elsevier, 2020-06)

Bacillus anthracis, the aetiological agent of anthrax, is regarded as a highly monomorphic pathogen that presents a low genetic diversity using standard molecular techniques. Whole genome sequencing and single nucleotide ...
Resistance sniffer : an online tool for prediction of drug resistance patterns of Mycobacterium tuberculosis isolates using next generation sequencing data

Muzondiwa, Dillon; Mutshembele, Awelani; Pierneef, Rian Ewald; Reva, Oleg N. (Elsevier, 2020-02)

The effective control of multidrug resistant tuberculosis (MDR-TB) relies upon the timely diagnosis and correct treatment of all tuberculosis cases. Whole genome sequencing (WGS) has great potential as a method for ...
Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools

Rotimi, A.M. (Adeola); Pierneef, Rian Ewald; Reva, Oleg N. (BioMed Central, 2018-08-30)

BACKGROUND : Metagenomic approaches have revealed the complexity of environmental microbiomes with the advancement in whole genome sequencing displaying a significant level of genetic heterogeneity on the species level. ...
syntenet : an R/Bioconductor package for the inference and analysis of synteny networks

Almeida-Silva, Fabricio; Zhao, Tao; Ullrich, Kristian K.; Schranz, M. Eric; Van de Peer, Yves (Oxford University Press, 2023-01)

Interpreting and visualizing synteny relationships across several genomes is a challenging task. We previously proposed a network-based approach for better visualization and interpretation of large-scale microsynteny ...
Virulence and antimicrobial resistance genes are enriched in the plasmidome of clinical Escherichia coli isolates compared with wastewater isolates from western Kenya

Wawire, Sifuna Anthony; Reva, Oleg N.; O'Brien, Thomas J.; Figueroa, Wendy; Dinda, Victor; Shivoga, William A.; Welch, Martin (Elsevier, 2021-07)

Many low-middle income countries in Africa have poorly-developed infectious disease monitoring systems. Here, we employed whole genome sequencing (WGS) to investigate the presence/absence of antimicrobial resistance (AMR) ...

Now showing items 1-7 of 7

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Browsing Research Articles (Biochemistry) by Subject "Whole genome sequencing (WGS)"

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