Browsing Research Articles (University of Pretoria) by UP Author "De Vos, Lieschen"

Browsing Research Articles (University of Pretoria) by UP Author "De Vos, Lieschen"

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  • Breed ancestry, divergence, admixture, and selection patterns of the Simbra crossbreed 
    Van der Nest, Magrieta Aletta; Hlongwane, Nompilo; Hadebe, Khanyisile; Chan, Wai Yin; Van der Merwe, Nicolaas Albertus (Albie); De Vos, Lieschen; Greyling, Ben; Kooverjee, Bhaveni B.; Soma, Pranisha Omduth; Dzomba, Edgar F.; Bradfield, Michael; Muchadeyi, Farai C. (Frontiers Media, 2021-01)
    In this study, we evaluated an admixed South African Simbra crossbred population, as well as the Brahman (Indicine) and Simmental (Taurine) ancestor populations to understand their genetic architecture and detect genomic ...
  • Characterization of host-specific genes from pine- and grass-associated species of the Fusarium fujikuroi species complex 
    Dewing, Claudette; Van der Nest, Magrieta Aletta; Santana, Quentin C.; Proctor, Robert H.; Wingfield, Brenda D.; Steenkamp, Emma Theodora; De Vos, Lieschen (MDPI, 2022-07-29)
    The Fusarium fujikuroi species complex (FFSC) includes socioeconomically important pathogens that cause disease for numerous crops and synthesize a variety of secondary metabolites that can contaminate feedstocks and ...
  • Complete genetic linkage maps from an interspecific cross between Fusarium circinatum and Fusarium subglutinans 
    De Vos, Lieschen; Myburg, Alexander Andrew; Wingfield, Michael J.; Desjardins, Anne E.; Gordon, Thomas R. (Tom); Wingfield, Brenda D. (Elsevier, 2007-08)
    The Gibberella fujikuroi complex includes many plant pathogens of agricultural crops and trees, all of which have anamorphs assigned to the genus Fusarium. In this study, an interspecific hybrid cross between Gibberella ...
  • Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips 
    Wingfield, Brenda D.; Berger, David Kenneth; Steenkamp, Emma Theodora; Lim, Hye-Jin; Duong, Tuan A.; Bluhm, Burton H.; De Beer, Z. Wilhelm; De Vos, Lieschen; Fourie, Gerda; Naidoo, Kershney; Olivier, Nicholas Abraham; Lin, Yao-Cheng; Van de Peer, Yves; Joubert, Fourie; Crampton, Bridget Genevieve; Swart, Velushka; Soal, Nicole Christine; Tatham, Catherine; Van der Nest, Magrieta Aletta; Van der Merwe, Nicolaas Albertus (Albie); Van Wyk, Stephanie; Wilken, Pieter Markus; Wingfield, Michael J. (International Mycological Association, 2017-11-21)
    The genomes of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens, and Ophiostoma ips are presented in this genome announcement. Three of these genomes are from plant pathogens and ...
  • Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata 
    Wingfield, Brenda D.; Bills, Gerald F.; Dong, Yang; Huang, Wenli; Nel, Wilma Janine; Swalarsk-Parry, Benedicta S.; Vaghefi, Niloofar; Wilken, Pieter Markus; An, Zhiqiang; De Beer, Z. Wilhelm; De Vos, Lieschen; Chen, Li; Duong, Tuan A.; Gao, Yun; Hammerbacher, Almuth; Kikkert, Julie R.; Li, Yan; Li, Huiying; Li, Kuan; Li, Qiang; Liu, Xingzhong; Ma, Xiao; Naidoo, Kershney; Pethybridge, Sarah J.; Sun, Jingzu; Steenkamp, Emma Theodora; Van der Nest, Magrieta Aletta; Van Wyk, Stephanie; Wingfield, Michael J.; Xiong, Chuan; Yue, Qun; Zhang, Xiaoling (International Mycological Association, 2018-06-11)
    Draft genomes of the species Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, ...
  • Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata 
    Wingfield, Brenda D.; Ades, Peter K.; Al-Naemi, Fatima A.; Beirn, Lisa A.; Bihon, Wubetu; Crouch, Jo Anne; De Beer, Z. Wilhelm; De Vos, Lieschen; Duong, Tuan A.; Fields, Christopher J.; Fourie, Gerda; Kanzi, Aquillah M.; Malapi-Wight, Martha; Pethybridge, Sarah J.; Radwan, Osman; Rendon, Gloria; Slippers, Bernard; Santana, Quentin C.; Steenkamp, Emma Theodora; Taylor, Paul W.J.; Vaghefi, Niloofar; Van der Merwe, Nicolaas Albertus (Albie); Veltri, Daniel; Wingfield, Michael J. (International Mycological Association, 2015-06-22)
    The genomes of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygami, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata are presented in this genome ...
  • Draft genome sequences of Diplodia sapinea, Ceratocystis manginecans, and Ceratocystis moniliformis 
    Van der Nest, Magrieta Aletta; Bihon, Wubetu; De Vos, Lieschen; Naidoo, Kershney; Roodt, Danielle; Rubagotti, Enrico; Slippers, Bernard; Steenkamp, Emma Theodora; Wilken, Pieter Markus; Wilson, Andrea M.; Wingfield, Michael J.; Wingfield, Brenda D. (International Mycological Association, 2014-06-19)
    The draft nuclear genomes of Diplodia sapinea, Ceratocystis moniliformis s. str., and C. manginecans are presented. Diplodia sapinea is an important shoot-blight and canker pathogen of Pinus spp., C. moniliformis is a ...
  • Draft genomes of Amanita jacksonii, Ceratocystis albifundus, Fusarium circinatum, Huntiella omanensis, Leptographium procerum, Rutstroemia sydowiana, and Sclerotinia echinophila 
    Van der Nest, Magrieta Aletta; Beirn, Lisa A.; Crouch, Jo Anne; Demers, Jill E.; De Beer, Z. Wilhelm; De Vos, Lieschen; Gordon, Thomas R. (Tom); Moncalvo, Jean-Marc; Naidoo, Kershney; Sanchez-Ramirez, Santiago; Roodt, Danielle; Santana, Quentin C.; Slinski, Stephanie; Stata, Matt; Taerum, Stephen J.; Wilken, Pieter Markus; Wilson, Andrea M.; Wingfield, Michael J.; Wingfield, Brenda D. (International Mycological Association, 2014-12-16)
    The genomes of fungi provide an important resource to resolve issues pertaining to their taxonomy, biology, and evolution. The genomes of Amanita jacksonii, Ceratocystis albifundus, a Fusarium circinatum variant, Huntiella ...
  • First fungal genome sequence from Africa : a preliminary analysis 
    Wingfield, Brenda D.; Steenkamp, Emma Theodora; Santana, Quentin C.; Coetzee, Martin Petrus Albertus; Bam, Stefan; Barnes, Irene; Beukes, Chrizelle Winsie; Chan, Wai Yin; De Vos, Lieschen; Fourie, Gerda; Friend, Melanie; Gordon, Thomas R. (Tom); Herron, Darryl A.; Holt, Carson; Korf, Ian; Kvas, Marija; Martin, Simon H.; Mlonyeni, X.O.M. (Xolile Osmond Mnyamezeli); Naidoo, Kershney; Phasha, Mmatshepho Malekgale; Postma, Alisa; Reva, Oleg N.; Roos, Heidi; Simpson, M.C. (Melissa Claire); Slinski, Stephanie; Slippers, Bernard; Sutherland, Rene; Van der Merwe, Nicolaas Albertus (Albie); Van der Nest, Magrieta Aletta; Venter, S.N. (Stephanus Nicolaas); Wilken, Pieter Markus; Yandell, Mark; Zipfel, Renate; Wingfield, Michael J. (Academy of Science of South Africa, 2012-01-25)
    Some of the most significant breakthroughs in the biological sciences this century will emerge from the development of next generation sequencing technologies. The ease of availability of DNA sequence made possible through ...
  • Genetic analysis of growth, morphology and pathogenicity in the F1 progeny of an interspecific cross between Fusarium circinatum and Fusarium subglutinans 
    De Vos, Lieschen; Van der Nest, Magrieta Aletta; Van der Merwe, Nicolaas Albertus (Albie); Wingfield, Michael J.; Wingfield, Brenda D. (Elsevier, 2011-09)
    Fusarium circinatum and Fusarium subglutinans are two distinct species in the Gibberella fujikuroi species complex. A genetic linkage map produced from an interspecific cross between these species was used to identify ...
  • Genetic linkage map for Amylostereum areolatum reveals an association between vegetative growth and sexual and self-recognition 
    Van der Nest, Magrieta Aletta; Slippers, Bernard; Steenkamp, Emma Theodora; De Vos, Lieschen; Van Zyl, Karlien; Stenlid, J.; Wingfield, Michael J.; Wingfield, Brenda D. (Elsevier, 2009)
    Amylostereum areolatum is a filamentous fungus that grows through tip extension, branching and hyphal fusion. In the homokaryotic phase, the hyphae of different individuals are capable of fusing followed by heterokaryon ...
  • Genome-wide analyses of repeat-induced point mutations in the Ascomycota 
    Van Wyk, Stephanie; Wingfield, Brenda D.; De Vos, Lieschen; Van der Merwe, Nicolaas Albertus (Albie); Steenkamp, Emma Theodora (Frontiers Media, 2021-02)
    The Repeat-Induced Point (RIP) mutation pathway is a fungus-specific genome defense mechanism that mitigates the deleterious consequences of repeated genomic regions and transposable elements (TEs). RIP mutates targeted ...
  • Genome-wide macrosynteny among Fusarium species in the Gibberella fujikuroi complex revealed by amplified fragment length polymorphisms 
    De Vos, Lieschen; Steenkamp, Emma Theodora; Martin, Simon H.; Santana, Quentin C.; Fourie, Gerda; Van der Merwe, Nicolaas Albertus (Albie); Wingfield, Michael J.; Wingfield, Brenda D. (Public Library of Science, 2014-12)
    The Gibberella fujikuroi complex includes many Fusarium species that cause significant losses in yield and quality of agricultural and forestry crops. Due to their economic importance, whole-genome sequence information ...
  • Identification and characterization of a QTL for growth of Fusarium circinatum on pine-based medium 
    Swalarsk-Parry, Benedicta S.; Steenkamp, Emma Theodora; Van Wyk, Stephanie; Santana, Quentin C.; Van der Nest, Magrieta Aletta; Hammerbacher, Almuth; Wingfield, Brenda D.; De Vos, Lieschen (MDPI, 2022-11-16)
    Fusarium circinatum is an economically important pathogen of pine and resides in the Fusarium fujikuroi species complex. Here we investigated the molecular processes underlying growth in F. circinatum by exploring the ...
  • IMA genome - F14 : Draft genome sequences of Penicillium roqueforti, Fusarium sororula, Chrysoporthe puriensis, and Chalaropsis populi 
    Van der Nest, Magrieta Aletta; Chavez, Renato; De Vos, Lieschen; Duong, Tuan A.; Gil-Duran, Carlos; Ferreira, Maria Alves; Lane, Frances Alice; Levican, Gloria; Santana, Quentin C.; Steenkamp, Emma Theodora; Suzuki, Hiroyuki; Tello, Mario; Rakoma, Jostina R.; Vaca, Inmaculada; Valdes, Natalia; Wilken, Pieter Markus; Wingfield, Michael J.; Wingfield, Brenda D. (International Mycological Association, 2021-03-05)
    Draft genomes of Penicillium roqueforti, Fusarium sororula, Chalaropsis populi, and Chrysoporthe puriensis are presented. Penicillium roqueforti is a model fungus for genetics, physiological and metabolic studies, as well ...
  • IMA Genome - F15 : Draft genome assembly of Fusarium pilosicola, Meredithiella fracta, Niebla homalea, Pyrenophora teres hybrid WAC10721, and Teratosphaeria viscida 
    Duong, Tuan A.; Aylward, Janneke; Ametrano, Claudio Gennaro; Poudel, Barsha; Santana, Quentin C.; Wilken, Pieter Markus; Martin, Anke; Arun‑Chinnappa, Kiruba Shankari; De Vos, Lieschen; DiStefano, Isabel; Grewe, Felix; Huhndorf, Sabine; Lumbsch, Helge Thorsten; Rakoma, Jostina R.; Poudel, Barsha; Steenkamp, Emma Theodora; Sun, Yukun; Van der Nest, Magrieta Aletta; Wingfield, Michael J.; Yilmaz, Neriman; Wingfield, Brenda D. (International Mycological Association, 2021-10-13)
    No abstract available.
  • IMA Genome - F16 : Draft genome assemblies of Fusarium marasasianum, Huntiella abstrusa, two Immersiporthe knoxdaviesiana isolates, Macrophomina pseudophaseolina, Macrophomina phaseolina, Naganishia randhawae, and Pseudocercospora cruenta 
    Wingfield, Brenda D.; De Vos, Lieschen; Wilson, Andi M.; Duong, Tuan A.; Vaghefi, Niloofar; Botes, Angela; Kharwar, Ravindra Nath; Chand, Ramesh; Poudel, Barsha; Aliyu, Habibu; Barbetti, Martin J.; Chen, ShuaiFei; De Maayer, Pieter; Liu, FeiFei; Navathe, Sudhir; Sinha, Shagun; Steenkamp, Emma Theodora; Suzuki, Hiroyuki; Tshisekedi, Kalonji A.; Van der Nest, Magrieta Aletta; Wingfield, Michael J. (BMC, 2022-02)
    Draft genome assemblies of Fusarium marasasianum, Huntiella abstrusa, two Immersiporthe knoxdaviesiana isolates, Macrophomina pseudophaseolina, Macrophomina phaseolina, Naganishia randhawae, and Pseudocercospora cruenta.
  • Intra-species genomic variation in the pine pathogen Fusarium circinatum 
    Maphosa, Mkhululi N.; Steenkamp, Emma Theodora; Kanzi, Aquillah M.; Van Wyk, Stephanie; De Vos, Lieschen; Santana, Quentin C.; Duong, Tuan A.; Wingfield, Brenda D. (MDPI, 2022-06-23)
    Fusarium circinatum is an important global pathogen of pine trees. Genome plasticity has been observed in different isolates of the fungus, but no genome comparisons are available. To address this gap, we sequenced and ...
  • Molecular characterization of Fusarium globosum strains from South African maize and Japanese wheat 
    Moses, Lorraine M.; Marasas, Walter F.O. (Walter Friedrich Otto); Vismer, Hester Francis; De Vos, Lieschen; Rheeder, John P.; Proctor, Robert H.; Wingfield, Michael J. (Springer, 2010-10)
    The fungus Fusarium globosum was first isolated from maize in South Africa and subsequently from wheat in Japan. Here, multiple analyses revealed that, despite morphological similarities, South African maize and Japanese ...
  • Multiple independent origins for a subtelomeric locus associated with growth rate in Fusarium circinatum 
    Van Wyk, Stephanie; Wingfield, Brenda D.; De Vos, Lieschen; Santana, Quentin C.; Van der Merwe, Nicolaas Albertus (Albie); Steenkamp, Emma Theodora (International Mycological Association, 2018-06)
    Fusarium is a diverse assemblage that includes a large number of species of considerable medical and agricultural importance. Not surprisingly, whole genome sequences for many Fusarium species have been published or are ...