Browsing by Author "Colle, Didier"

Browsing by Author "Colle, Didier"

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  • A Cytoscape app for motif enumeration with ISMAGS 
    Van Parys, Thomas; Melckenbeeck, Ine; Houbraken, Maarten; Audenaert, Pieter; Colle, Didier; Pickavet, Mario; Demeester, Piet; Van de Peer, Yves (Oxford University Press, 2017-02)
    SUMMARY : We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif’s symmetries to make the search more efficient. The Cytoscape app ...
  • Optimising orbit counting of arbitrary order by equation selection 
    Melckenbeeck, Ine; Audenaert, Pieter; Van Parys, Thomas; Van de Peer, Yves; Colle, Didier; Pickavet, Mario (BioMed Central, 2019-01-15)
    BACKGROUND : Graphlets are useful for bioinformatics network analysis. Based on the structure of Hoˇcevar and Demšar’s ORCA algorithm, we have created an orbit counting algorithm, named Jesse. This algorithm, like ORCA, ...