Experimental Babesia rossi infection induces hemolytic, metabolic, and viral response pathways in the canine host

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Authors

Smith, Rachel L.
Goddard, Amelia
Boddapati, Arun
Brooks, Steven
Schoeman, Johan P.
Lack, Justin
Leisewitz, Andrew L.
Ackerman, Hans

Journal Title

Journal ISSN

Volume Title

Publisher

BMC

Abstract

BACKGROUND : Babesia rossi is a leading cause of morbidity and mortality among the canine population of sub- Saharan Africa, but pathogenesis remains poorly understood. Previous studies of B. rossi infection were derived from clinical cases, in which neither the onset of infection nor the infectious inoculum was known. Here, we performed controlled B. rossi inoculations in canines and evaluated disease progression through clinical tests and whole blood transcriptomic profiling. RESULTS : Two subjects were administered a low inoculum (104 parasites) while three received a high (108 parasites). Subjects were monitored for 8 consecutive days; anti-parasite treatment with diminazene aceturate was administered on day 4. Blood was drawn prior to inoculation as well as every experimental day for assessment of clinical parameters and transcriptomic profiles. The model recapitulated natural disease manifestations including anemia, acidosis, inflammation and behavioral changes. Rate of disease onset and clinical severity were proportional to the inoculum. To analyze the temporal dynamics of the transcriptomic host response, we sequenced mRNA extracted from whole blood drawn on days 0, 1, 3, 4, 6, and 8. Differential gene expression, hierarchical clustering, and pathway enrichment analyses identified genes and pathways involved in response to hemolysis, metabolic changes, and several arms of the immune response including innate immunity, adaptive immunity, and response to viral infection. CONCLUSIONS : This work comprehensively characterizes the clinical and transcriptomic progression of B. rossi infection in canines, thus establishing a large mammalian model of severe hemoprotozoal disease to facilitate the study of host-parasite biology and in which to test novel anti-disease therapeutics. The knowledge gained from the study of B. rossi in canines will not only improve our understanding of this emerging infectious disease threat in domestic dogs, but also provide insight into the pathobiology of human diseases caused by Babesia and Plasmodium species.

Description

Additional file 1: Table S1. A summary of MultiQC data. Shown are the number of reads mapped (in millions), percent of these reads aligned to the canine reference genome, and percent GC content of these reads. Samples corresponding to low inoculum day 4 and high inoculum days 3 and 4 were not included in the mean.
Additional file 2: Table S2. DEGs on every day in both inoculum cohorts. Genes that were differentially expressed on every experimental day in both cohorts (except day 1 in the low inoculum) are shown, along with their corresponding cluster.
Additional file 3: Table S3. Pearson correlation values of erythroblast transcript trajectory with reticulocyte count. The expression level of each gene (in CPM) was correlated with the reticulocyte count (109/L) on each day. This allowed for correlation based on expression trajectory through time.
Additional file 4: Fig. S1. Top 10 Gene Ontology (GO)- and Reactomeannoted pathways by FDR on each day in each inoculum cohort (A – low; B – high). x-axis: percentage of genes in pathway that were identified as differentially expressed on the respective day; y-axis: pathway name; point color: absolute number of genes associated with the pathway that were identified as differentially expressed on the corresponding day. Note that color does not indiciate up- or down-reulgation of genes in pathway.

Keywords

Babesia rossi, Canine host, Time course RNA-seq, Host response to infection, Hemoprotozoan parasite

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Citation

Smith, R.L., Goddard, A., Boddapati, A. et al. 2021, 'Experimental Babesia rossi infection induces hemolytic, metabolic, and viral response pathways in the canine host', BMC Genomics, vol. 22, art. 619, pp. 1-16.