Filovirus RefSeq entries : evaluation and selection of Filovirus type variants, type sequences, and names

dc.contributor.authorKuhn, Jens H.
dc.contributor.authorAndersen, Kristian G.
dc.contributor.authorBao, Yiming M.
dc.contributor.authorBavari, Sina
dc.contributor.authorBecker, Stephan
dc.contributor.authorBennett, Richard S.
dc.contributor.authorBergman, Nicholas H.
dc.contributor.authorBlinkova, Olga
dc.contributor.authorBradfute, Steven
dc.contributor.authorBrister, J. Rodney
dc.contributor.authorBukreyev, Alexander A.
dc.contributor.authorChandran, Kartik
dc.contributor.authorChepurnov, Alexander A.
dc.contributor.authorDavey, Robert A.
dc.contributor.authorDietzgen, Ralf G.
dc.contributor.authorDoggett, Norman A.
dc.contributor.authorDolnik, Olga
dc.contributor.authorDye, John M.
dc.contributor.authorEnterlein, Sven
dc.contributor.authorFenimore, Paul W.
dc.contributor.authorFormenty, Pierre
dc.contributor.authorFreiberg, Alexander N.
dc.contributor.authorGarry, Robert F.
dc.contributor.authorGarza, Nicole L.
dc.contributor.authorGire, Stephen K.
dc.contributor.authorGonzalez, Jean-Paul
dc.contributor.authorGriffiths, Anthony
dc.contributor.authorHappi, Christian T.
dc.contributor.authorHensley, Lisa E.
dc.contributor.authorHerbert, Andrew S.
dc.contributor.authorHevey, Michael C.
dc.contributor.authorHoenen, Thomas
dc.contributor.authorHonko, Anna N.
dc.contributor.authorIgnatyev, Georgy M.
dc.contributor.authorJahrling, Peter B.
dc.contributor.authorJohnson, Joshua C.
dc.contributor.authorJohnson, Karl M.
dc.contributor.authorKindrachuk, Jason
dc.contributor.authorKlenk, Hans-Dieter
dc.contributor.authorKobinger, Gary
dc.contributor.authorKochel, Tadeusz J.
dc.contributor.authorLackemeyer, Matthew G.
dc.contributor.authorLackner, Daniel F.
dc.contributor.authorLeroy, Eric M.
dc.contributor.authorLever, Mark S.
dc.contributor.authorMuhlberger, Elke
dc.contributor.authorNetesov, Sergey V.
dc.contributor.authorOlinger, Gene G.
dc.contributor.authorOmilabu, Sunday A.
dc.contributor.authorPalacios, Gustavo
dc.contributor.authorPanchal, Rekha G.
dc.contributor.authorPark, Daniel J.
dc.contributor.authorPatterson, Jean L.
dc.contributor.authorPaweska, Janusz Tadeusz
dc.contributor.authorPeters, Clarence J.
dc.contributor.authorPettitt, James
dc.contributor.authorPitt, Louise
dc.contributor.authorRadoshitzky, Sheli R.
dc.contributor.authorRyabchikova, Elena I.
dc.contributor.authorSaphire, Erica Ollmann
dc.contributor.authorSabeti, Pardis C.
dc.contributor.authorSealfon, Rachel
dc.contributor.authorShestopalov, Aleksandr M.
dc.contributor.authorSmither, Sophie J.
dc.contributor.authorSullivan, Nancy J.
dc.contributor.authorSwanepoel, Robert
dc.contributor.authorTakada, Ayato
dc.contributor.authorTowner, Jonathan S.
dc.contributor.authorVan der Groen, Guido
dc.contributor.authorVolchkov, Viktor E.
dc.contributor.authorVolchkova, Valentina A.
dc.contributor.authorWahl-Jensen, Victoria
dc.contributor.authorWarren, Travis K.
dc.contributor.authorWarfield, Kelly L.
dc.contributor.authorWeidmann, Manfred
dc.contributor.authorNichol, Stuart T.
dc.date.accessioned2015-05-19T07:26:47Z
dc.date.available2015-05-19T07:26:47Z
dc.date.issued2014
dc.description.abstractSequence determination of complete or coding-complete genomes of viruses is becoming common practice for supporting the work of epidemiologists, ecologists, virologists, and taxonomists. Sequencing duration and costs are rapidly decreasing, sequencing hardware is under modification for use by non-experts, and software is constantly being improved to simplify sequence data management and analysis. Thus, analysis of virus disease outbreaks on the molecular level is now feasible, including characterization of the evolution of individual virus populations in single patients over time. The increasing accumulation of sequencing data creates a management problem for the curators of commonly used sequence databases and an entry retrieval problem for end users. Therefore, utilizing the data to their fullest potential will require setting nomenclature and annotation standards for virus isolates and associated genomic sequences. The National Center for Biotechnology Information’s (NCBI’s) RefSeq is a non-redundant, curated database for reference (or type) nucleotide sequence records that supplies source data to numerous other databases. Building on recently proposed templates for filovirus variant naming [<virus name> (<strain>)/<isolation host-suffix>/<country of sampling>/<year of sampling>/<genetic variant designation>-<isolate designation>], we report consensus decisions from a majority of past and currently active filovirus experts on the eight filovirus type variants and isolates to be represented in RefSeq, their final designations, and their associated sequences.en_ZA
dc.description.librarianam2015en_ZA
dc.description.urihttp://www.mdpi.com/journal/virusesen_ZA
dc.identifier.citationKuhn, JH, Andersen, KG, Bao, Y, Bavari, S, Becker, S, Richard S. Bennett, RS, Bergman, NH, Blinkova, O, Bradfute, S, Brister, JR, Bukreyev, A, Chandran, K,Chepurnov, AA, Davey, RA, Dietzgen, RG, Doggett, NA, Dolnik , O, Dye, JM, Enterlein, S, Fenimore, PW, Formenty, P, Freiberg, AN, Garry, RF, Garza, NL, Gire, SK, Gonzalez, J-P, Griffiths, A, Happi, CT, Hensley, LE, Herbert, AS, Hevey, MC, Hoenen, T, Honko, AN, Ignatyev, GM, Jahrling, PB, Johnson, JC, Johnson, KM, Kindrachuk, J, Klenk, H-D, Kobinger, G, Kochel, TJ, Lackemeyer, MG, Lackner, DF, Leroy, EM, Lever, MS, Muhlberger, E, Netesov, SV, Olinger, GG, Omilabu, SA, Palacios, G, Panchal, RG, Park, DJ, Patterson, JL, Paweska, JT, Peters, CJ, Pettitt, J, Pitt, L, Radoshitzky, SR, Ryabchikova, EI, Saphire, EO, Sabeti, PC, Sealfon, R, Shestopalov, AM, Smither, SJ, Sullivan, NJ, Swanepoel, R, Takada, A, Towner, JS, Van der Groen, G, Volchkov, VE, Volchkova, VA, Wahl-Jensen, V, Warren, TK, Warfield, KL, Weidmann, M & Nichol, ST 2014, 'Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names', Viruses, vol. 6, pp. 3663-3682.en_ZA
dc.identifier.issn1999-4915
dc.identifier.other10.3390/v6093663
dc.identifier.urihttp://hdl.handle.net/2263/45170
dc.language.isoenen_ZA
dc.publisherMDPI Publishingen_ZA
dc.rights© 2014 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).en_ZA
dc.subjectBundibugyo virusen_ZA
dc.subjectcDNA cloneen_ZA
dc.subjectCuevavirusen_ZA
dc.subjectEbolaen_ZA
dc.subjectEbola virus (EBOV)en_ZA
dc.subjectFiloviriden_ZA
dc.subjectFiloviridaeen_ZA
dc.subjectFilovirusen_ZA
dc.subjectGenome annotationen_ZA
dc.subjectInternational Committee on Taxonomy of Virusesen_ZA
dc.subjectLloviu virusen_ZA
dc.subjectMarburg virusen_ZA
dc.subjectMarburgvirusen_ZA
dc.subjectmononegaviraden_ZA
dc.subjectMononegaviralesen_ZA
dc.subjectMononegavirusen_ZA
dc.subjectRavn virusen_ZA
dc.subjectRefSeqen_ZA
dc.subjectReston virusen_ZA
dc.subjectReverse geneticsen_ZA
dc.subjectSudan virusen_ZA
dc.subjectTaï Forest virusen_ZA
dc.subjectVirus classificationen_ZA
dc.subjectVirus isolateen_ZA
dc.subjectVirus nomenclatureen_ZA
dc.subjectVirus strainen_ZA
dc.subjectVirus taxonomyen_ZA
dc.subjectVirus varianten_ZA
dc.subjectInternational Committee on Taxonomy of Viruses (ICTV)en_ZA
dc.titleFilovirus RefSeq entries : evaluation and selection of Filovirus type variants, type sequences, and namesen_ZA
dc.typeArticleen_ZA

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