Genomic breeding for diameter growth and tolerance to Leptocybe gall wasp and Botryosphaeria/Teratosphaeria fungal disease complex in Eucalyptus grandis

dc.contributor.authorMphahlele, M.M. (Makobatjatji)
dc.contributor.authorIsik, Fikret
dc.contributor.authorHodge, Gary R.
dc.contributor.authorMyburg, Alexander Andrew
dc.contributor.emailzander.myburg@up.ac.zaen_ZA
dc.date.accessioned2021-04-09T15:25:20Z
dc.date.available2021-04-09T15:25:20Z
dc.date.issued2021-02
dc.descriptionSupplementary Figure 1. Trait distribution plots of the trial sites. The top row is the diameter growth histogram plot, the middle row is the histogram plot for Lepto incidence scores, and the bottom row is the BotryoTera incidence scores. The last column is the combined distribution of the measured traits across the three sites.en_ZA
dc.descriptionSupplementary Figure 2. Frequency plots across the representative pedigree linked and unrelated generations. The top row is the diameter growth histogram plot, the middle row is the histogram plot for Lepto incidence scores, and the bottom row is the BotryoTera incidence scores.en_ZA
dc.descriptionSupplementary Table 1. Environmental and trial design information of the study population. The number of families and their pedigree generations are indicated with the phenotyped and genotyped individuals.en_ZA
dc.descriptionTable_1_Genomic Breeding for Diameter Growth and Tolerance to Leptocybe Gall Wasp and Botryosphaeria/Teratosphaeria Fungal Disease Complex in Eucalypt.XLSXen_ZA
dc.descriptionTable_2_Genomic Breeding for Diameter Growth and Tolerance to Leptocybe Gall Wasp and Botryosphaeria/Teratosphaeria Fungal Disease Complex in Eucalypt.XLSXen_ZA
dc.descriptionTable_3_Genomic Breeding for Diameter Growth and Tolerance to Leptocybe Gall Wasp and Botryosphaeria/Teratosphaeria Fungal Disease Complex in Eucalypt.XLSXen_ZA
dc.descriptionTable_4_Genomic Breeding for Diameter Growth and Tolerance to Leptocybe Gall Wasp and Botryosphaeria/Teratosphaeria Fungal Disease Complex in Eucalypt.csven_ZA
dc.description.abstractEucalyptus grandis is one of the most important species for hardwood plantation forestry around the world. At present, its commercial deployment is in decline because of pests and pathogens such as Leptocybe invasa gall wasp (Lepto), and often co-occurring fungal stem diseases such as Botryosphaeria dothidea and Teratosphaeria zuluensis (BotryoTera). This study analyzed Lepto, BotryoTera, and stem diameter growth in an E. grandis multi-environmental, genetic trial. The study was established in three subtropical environments. Diameter growth and BotryoTera incidence scores were assessed on 3,334 trees, and Lepto incidence was assessed on 4,463 trees from 95 half-sib families. Using the Eucalyptus EUChip60K SNP chip, a subset of 964 trees from 93 half-sib families were genotyped with 14,347 informative SNP markers. We employed single-step genomic BLUP (ssGBLUP) to estimate genetic parameters in the genetic trial. Diameter and Lepto tolerance showed a positive genetic correlation (0.78), while BotryoTera tolerance had a negative genetic correlation with diameter growth (−0.38). The expected genetic gains for diameter growth and Lepto and BotryoTera tolerance were 12.4, 10, and −3.4%, respectively. We propose a genomic selection breeding strategy for E. grandis that addresses some of the present population structure problems.en_ZA
dc.description.departmentBiochemistryen_ZA
dc.description.departmentForestry and Agricultural Biotechnology Institute (FABI)en_ZA
dc.description.departmentGeneticsen_ZA
dc.description.departmentMicrobiology and Plant Pathologyen_ZA
dc.description.librarianhj2021en_ZA
dc.description.sponsorshipThe National Research Foundation (NRF) Bioinformatics and Functional Genomics Program (BFG), the Technology and Human Resources for Industry Program (THRIP) and Mondi South Africa.en_ZA
dc.description.urihttp://www.frontiersin.org/Plant_Scienceen_ZA
dc.identifier.citationMphahlele MM, Isik F, Hodge GR and Myburg AA (2021) Genomic Breeding for Diameter Growth and Tolerance to Leptocybe Gall Wasp and Botryosphaeria/Teratosphaeria Fungal Disease Complex in Eucalyptus grandis. Frontiers in Plant Science 12:638969. doi: 10.3389/fpls.2021.638969.en_ZA
dc.identifier.issn1664-462X (online)
dc.identifier.other10.3389/fpls.2021.638969
dc.identifier.urihttp://hdl.handle.net/2263/79377
dc.language.isoenen_ZA
dc.publisherFrontiers Mediaen_ZA
dc.rights© 2020 Authors. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY).en_ZA
dc.subjectEucalyptus grandisen_ZA
dc.subjectHardwooden_ZA
dc.subjectPlantation forestryen_ZA
dc.subjectGall waspsen_ZA
dc.subjectBlue gum chalcid wasp (Leptocybe invasa)en_ZA
dc.subjectFungal stem diseaseen_ZA
dc.subjectBotryosphaeria dothideaen_ZA
dc.subjectTeratosphaeria zuluensisen_ZA
dc.titleGenomic breeding for diameter growth and tolerance to Leptocybe gall wasp and Botryosphaeria/Teratosphaeria fungal disease complex in Eucalyptus grandisen_ZA
dc.typeArticleen_ZA

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