The complete mitochondrial genome of Gyps coprotheres (Aves, Accipitridae, Accipitriformes) : phylogenetic analysis of mitogenome among raptors

dc.contributor.authorAdawaren, Emmanuel Oluwasegun
dc.contributor.authorDu Plessis, Morne
dc.contributor.authorSuleman, Essa
dc.contributor.authorKindler, Duodane
dc.contributor.authorOosthuizen, Almero
dc.contributor.authorMukandiwa, Lillian
dc.contributor.authorNaidoo, Vinny
dc.date.accessioned2021-07-15T13:39:08Z
dc.date.available2021-07-15T13:39:08Z
dc.date.issued2020-11-11
dc.descriptionAdditional File 1: Genomic sequences of Gyps coprotheres mitochondrial genome DOI: 10.7717/peerj.10034/supp-1en_ZA
dc.descriptionAdditional File 2: Phylogenetic Analysis Result using COX 1 Mitogene Results of Phylogenetic analyses using maximum likelihood (ML) analysis indicated evolutionary relationships among 32 raptor species based on COXI sequences. Strix leptogrammica was used as outgroup. Bootstrap support values for ML analyses are indicated on the nodes. The solid border rectangle indicates a close phylogenetic relationship between old world vultures and eagles confirmed with high bootstrap values with greater chances of shared susceptibility based on their close evolutionary relationship. While distantly related raptor bird species included within the broken border rectangle are less likely to succumb to diclofenac toxicity as reported for turkey vulture (Cathartes aura) (Rattner et al., 2008). DOI: 10.7717/peerj.10034/supp-2en_ZA
dc.description.abstractThree species of Old World vultures on the Asian peninsula are slowly recovering from the lethal consequences of diclofenac. At present the reason for species sensitivity to diclofenac is unknown. Furthermore, it has since been demonstrated that other Old World vultures like the Cape (Gyps coprotheres; CGV) and griffon (G. fulvus) vultures are also susceptible to diclofenac toxicity. Oddly, the New World Turkey vulture (Cathartes aura) and pied crow (Corvus albus) are not susceptible to diclofenac toxicity. As a result of the latter, we postulate an evolutionary link to toxicity. As a first step in understanding the susceptibility to diclofenac toxicity, we use the CGV as a model species for phylogenetic evaluations, by comparing the relatedness of various raptor species known to be susceptible, non-susceptible and suspected by their relationship to the Cape vulture mitogenome. This was achieved by next generation sequencing and assembly. The Cape vulture mitogenome had a genome size of 16,908 bp. The mitogenome phylogenetic analysis indicated a close evolutionary relationship between Old World vultures and other members of the Accipitridae as indicated by bootstrap value of 100% on the phylogenetic trees. Based on this, we postulate that the other species could also be sensitive to the toxic effects of diclofenac. This warrants further investigations.en_ZA
dc.description.departmentParaclinical Sciencesen_ZA
dc.description.librarianam2021en_ZA
dc.description.sponsorshipThermo Fisher Scientific (Mr Wayne Barnes) and the National Research Foundation (NRF) of South Africa.en_ZA
dc.description.urihttps://peerj.comen_ZA
dc.identifier.citationAdawaren EO, Du Plessis M, Suleman E, Kindler D, Oosthuizen AO, Mukandiwa L, Naidoo V. 2020. The com- plete mitochondrial genome of Gyps coprotheres (Aves, Accipitridae, Accipitriformes): phylogenetic analysis of mitogenome among raptors. PeerJ 8:e10034 http://DOI.org/10.7717/peerj.10034.en_ZA
dc.identifier.issn2167-8359 (online)
dc.identifier.other10.7717/peerj.10034
dc.identifier.urihttp://hdl.handle.net/2263/80875
dc.language.isoenen_ZA
dc.publisherPeerJen_ZA
dc.rights© 2020 Adawaren et al. Distributed under Creative Commons CC-BY 4.0.en_ZA
dc.subjectAccipitridaeen_ZA
dc.subjectPhylogenyen_ZA
dc.subjectSusceptibilityen_ZA
dc.subjectDiclofenac toxicityen_ZA
dc.subjectRaptorsen_ZA
dc.subjectMitochondrialen_ZA
dc.subjectGenomeen_ZA
dc.subjectAccipitriformesen_ZA
dc.subjectCape vulture (Gyps coprotheres)en_ZA
dc.subjectCape griffon (Gyps coprotheres)en_ZA
dc.subjectNew World Turkey vulture (Cathartes aura)en_ZA
dc.subjectPied crow (Corvus albus)en_ZA
dc.subjectGriffon vulture (Gyps fulvus)en_ZA
dc.titleThe complete mitochondrial genome of Gyps coprotheres (Aves, Accipitridae, Accipitriformes) : phylogenetic analysis of mitogenome among raptorsen_ZA
dc.typeArticleen_ZA

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