A review of recently introduced Aspergillus, Penicillium, Talaromyces and other Eurotiales species

dc.contributor.authorVisagie, Cobus M.
dc.contributor.authorYilmaz, Neriman
dc.contributor.authorKocsube, S.
dc.contributor.authorFrisvad, J.C.
dc.contributor.authorHubka, V.
dc.contributor.authorSamson, R.A.
dc.contributor.authorHoubraken, J.
dc.contributor.emailcobus.visagie@fabi.up.ac.zaen_US
dc.date.accessioned2024-11-27T11:33:46Z
dc.date.available2024-11-27T11:33:46Z
dc.date.issued2024-03
dc.descriptionSUPPLEMENTARY MATERIAL : FIG. S1. Phylogenetic trees of Aspergillus section Aenei series Aenei based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to A. versicolor. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S2. Phylogenetic trees of Aspergillus section Candidi series Candidi based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to A. neotritici. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S3. Phylogenetic trees of Aspergillus sections Cavernicolarum, Ochraceorosei and Sparsi based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to A. bisporus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S4. Phylogenetic trees of Aspergillus section Circumdati series Sclerotiorum based on BenA, CaM, and RPB2, and series Steynii based on ITS. Strains of recently described species are shown in bold coloured text. Trees were rooted to A. ochraceus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S5. Phylogenetic trees of Aspergillus section Cremei series Wentiorum based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to A. cremeus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S6. Phylogenetic trees of Aspergillus section Flavi series Alliacei and Flavi based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. The tree was rooted to A. avenaceus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. Representative strains are indicated by R. FIG. S7. Phylogenetic trees of Aspergillus section Flavipedes based on BenA, CaM, RPB2 and ITS. Strains of recently described species are shown in bold coloured text. Trees were rooted to A. terreus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S8. Phylogenetic trees of Aspergillus section Fumigati based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to A. clavatus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S9. Phylogenetic trees of Aspergillus section Nidulantes series Versicolores based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to A. aeneus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S10. Phylogenetic trees of Aspergillus section Nigri series Japonici and Nigri based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to A. candidus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S11. Phylogenetic trees of Aspergillus section Polypaecilum based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to A. cremeus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S12. Phylogenetic trees of Aspergillus section Terrei series Nivei and Terrei based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to A. ambiguus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S13. Phylogenetic trees of Aspergillus section Usti series Calidousti based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to A. ustus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S14. Phylogenetic trees of Paecilomyces based on BenA, CaM and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to Thermoascus crustaceus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S15. Phylogenetic trees of Penicillium sections Aspergilloides, Charlesia, Cinnamopurpurea and Ramigena based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to P. taxi. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S16. Phylogenetic trees of Penicillium section Brevicompacta based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to P. tularense (except RPB2 that was midpoint rooted). UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S17. Phylogenetic trees of Penicillium section Fasciculata series Camembertiorum based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to P. expansum. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S18. Phylogenetic trees of Penicillium section Canescentia based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. The tree was midpoint rooted. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S19. Phylogenetic trees of Penicillium section Citrina based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to P. euglaucum. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S20. Phylogenetic trees of Penicillium sections Crypta and Torulomyces based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to P. alfredii. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S21. Phylogenetic trees of Penicillium sections Exilicaulis and Gracilenta based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to P. stolkiae. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S22. Phylogenetic trees of Penicillium section Lanata-Divaricata series Janthinella and Simplicissima, based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to P. stolkiae. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S23. Phylogenetic trees of Penicillium section Lanata-Divaricata series Dalearum, Oxalica and Rolfsiorum, based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to the series Oxalica clade. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S24. Phylogenetic trees of Penicillium sections Paradoxa, Ramosum and Robsamsonia, based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. The tree was midpoint rooted. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S25. Phylogenetic trees of Penicillium section Sclerotiorum, based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to P. glabrum. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S26. Phylogenetic trees of Rasamsonia, based on BenA, CaM and ITS. Strains of recently described species are shown in bold coloured text. The tree was rooted to Trichocoma paradoxa. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by superscript T. Representative strains are indicated by R. FIG. S27. Phylogenetic trees of Talaromyces section Helici, based on BenA, CaM and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to T. purpureogenus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S28. Phylogenetic trees of Talaromyces section Purpurei and Subinflati, based on BenA, CaM, and RPB2. Strains of recently described species are shown in bold coloured text. Trees were midpoint rooted. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S29. Phylogenetic trees of Talaromyces section Talaromyces, based on BenA, CaM and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to T. helicus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. FIG. S30. Phylogenetic trees of Talaromyces section Trachyspermi, based on BenA, CaM and RPB2. Strains of recently described species are shown in bold coloured text. Trees were rooted to T. purpureus. UltraFast Bootstrap support values higher than 95 % are shown at relevant branches. Ex-type strains are indicated by T. TABLE S1. List of reference species used for comparisons in this study.en_US
dc.description.abstractThe order Eurotiales is diverse and includes species that impact our daily lives in many ways. In the past, its taxonomy was difficult due to morphological similarities, which made accurate identification of species difficult. This situation improved and stabilised with recent taxonomic and nomenclatural revisions that modernised Aspergillus, Penicillium and Talaromyces. This was mainly due to the availability of curated accepted species lists and the publication of comprehensive DNA sequence reference datasets. This has also led to a sharp increase in the number of new species described each year with the accepted species lists in turn also needing regular updates. The focus of this study was to review the 160 species described between the last list of accepted species published in 2020 until 31 December 2022. To review these species, single-gene phylogenies were constructed and GCPSR (Genealogical Concordance Phylogenetic Species Recognition) was applied. Multi-gene phylogenetic analyses were performed to further determine the relationships of the newly introduced species. As a result, we accepted 133 species (37 Aspergillus, two Paecilomyces, 59 Penicillium, two Rasamsonia, 32 Talaromyces and one Xerochrysium), synonymised 22, classified four as doubtful and created a new combination for Paraxerochrysium coryli, which is classified in Xerochrysium. This brings the number of accepted species to 453 for Aspergillus, 12 for Paecilomyces, 535 for Penicillium, 14 for Rasamsonia, 203 for Talaromyces and four for Xerochrysium. We accept the newly introduced section Tenues (in Talaromyces), and series Hainanici (in Aspergillus sect. Cavernicolarum) and Vascosobrinhoana (in Penicillium sect. Citrina). In addition, we validate the invalidly described species Aspergillus annui and A. saccharicola, and series Annuorum (in Aspergillus sect. Flavi), introduce a new combination for Dichlaena lentisci (type of the genus) and place it in a new section in Aspergillus subgenus Circumdati, provide an updated description for Rasamsonia oblata, and list excluded and recently synonymised species that were previously accepted. This study represents an important update of the accepted species lists in Eurotiales.en_US
dc.description.departmentBiochemistryen_US
dc.description.departmentGeneticsen_US
dc.description.departmentMicrobiology and Plant Pathologyen_US
dc.description.librarianam2024en_US
dc.description.sdgSDG-15:Life on landen_US
dc.description.sponsorshipThe European Union’s Horizon 2020 research and innovation program (RISE) under the Marie Skłodowska-Curie grant; the University of Pretoria’s University Capacity Development Programme (UCDP) grant; and the Czech Ministry of Health.en_US
dc.description.urihttp://www.studiesinmycology.orgen_US
dc.identifier.citationVisagie, C.M., Yilmaz, N., Kocsubé, S., Frisvad, J.C., Hubka, V., Samson, R.A. & Houbraken, J. (2024). A review of recently introduced Aspergillus, Penicillium, Talaromyces and other Eurotiales species. Studies in Mycology 107: 1–66. DOI: 10.3114/sim.2024.107.01.en_US
dc.identifier.issn0166-0616 (print)
dc.identifier.issn1872-9797 (online)
dc.identifier.other10.3114/sim.2024.107.01
dc.identifier.urihttp://hdl.handle.net/2263/99627
dc.language.isoenen_US
dc.publisherWesterdijk Fungal Biodiversity Instituteen_US
dc.rights© 2024 Westerdijk Fungal Biodiversity Institute. This is an open access article under the CC BY-NC-ND license.en_US
dc.subjectAccepted species listen_US
dc.subjectAspergillaceaeen_US
dc.subjectDNA barcodesen_US
dc.subjectNew taxaen_US
dc.subjectNomenclatureen_US
dc.subjectPenicillaginaceaeen_US
dc.subjectPhylogenetic species concepten_US
dc.subjectThermoascaceaeen_US
dc.subjectTrichocomaceaeen_US
dc.subjectDeoxyribonucleic acid (DNA)en_US
dc.subjectSDG-15: Life on landen_US
dc.titleA review of recently introduced Aspergillus, Penicillium, Talaromyces and other Eurotiales speciesen_US
dc.typeArticleen_US

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