The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms

dc.contributor.authorWalker, Kimberly
dc.contributor.authorKalra, Divya
dc.contributor.authorLowdon, Rebecca
dc.contributor.authorChen, Guangyi
dc.contributor.authorMolik, David
dc.contributor.authorSoto, Daniela C.
dc.contributor.authorDabbaghie, Fawaz
dc.contributor.authorAl Khleifat, Ahmad
dc.contributor.authorMahmoud, Medhat
dc.contributor.authorPaulin, Luis F.
dc.contributor.authorRaza, Muhammad Sohail
dc.contributor.authorPfeifer, Susanne P.
dc.contributor.authorAgustinho, Daniel Paiva
dc.contributor.authorAliyev, Elbay
dc.contributor.authorAvdeyev, Pavel
dc.contributor.authorBarrozo, Enrico R.
dc.contributor.authorBehera, Sairam
dc.contributor.authorBillingsley, Kimberley
dc.contributor.authorChong, Li Chuin
dc.contributor.authorChoubey, Deepak
dc.contributor.authorDe Coster, Wouter
dc.contributor.authorFu, Yilei
dc.contributor.authorGener, Alejandro R.
dc.contributor.authorHefferon, Timothy
dc.contributor.authorHenke, David Morgan
dc.contributor.authorHops, Wolfram
dc.contributor.authorIllarionova, Anastasia
dc.contributor.authorJochum, Michael D.
dc.contributor.authorJose, Maria
dc.contributor.authorKesharwani, Rupesh K.
dc.contributor.authorKolora, Sree Rohit Raj
dc.contributor.authorKubica, Jedrzej
dc.contributor.authorLakra, Priya
dc.contributor.authorLattimer, Damaris
dc.contributor.authorLiew, Chia-Sin
dc.contributor.authorLo, Bai-Wei
dc.contributor.authorLo, Chunhsuan
dc.contributor.authorLötter, Anneri
dc.contributor.authorMajidian, Sina
dc.contributor.authorMendem, Suresh Kumar
dc.contributor.authorMondal, Rajarshi
dc.contributor.authorOhmiya, Hiroko
dc.contributor.authorParvin, Nasrin
dc.contributor.authorPeralta, Carolina
dc.contributor.authorPoo, Chi-Lam
dc.contributor.authorPrabhakaran, Ramanandan
dc.contributor.authorSaitou, Marie
dc.contributor.authorSammi, Aditi
dc.contributor.authorSanio, Philippe
dc.contributor.authorSapoval, Nicolae
dc.contributor.authorSyed, Najeeb
dc.contributor.authorTreangen, Todd
dc.contributor.authorWang, Gaojianyong
dc.contributor.authorXu, Tiancheng
dc.contributor.authorYang, Jianzhi
dc.contributor.authorZhang, Shangzhe
dc.contributor.authorZhou, Weiyu
dc.contributor.authorSedlazeck, Fritz J.
dc.contributor.authorBusby, Ben
dc.date.accessioned2023-06-27T06:08:31Z
dc.date.available2023-06-27T06:08:31Z
dc.date.issued2022
dc.descriptionDATA AVAILABILITY : The data used for these projects were obtained from publicly accessible repositories and are available in Table 1.en_US
dc.description.abstractIn October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics.en_US
dc.description.departmentBiochemistryen_US
dc.description.librarianam2023en_US
dc.description.sponsorshipThe National Library of Medicine, ALS Association Milton Safenowitz Research Fellowship, The Motor Neurone Disease Association (MNDA) Fellowship, The NIHR Maudsley Biomedical Research Centre, a National Science Foundation CAREER grant, The Research Council of Norway, a postdoctoral fellowship from the FWO, the Swiss National Science Foundation, the USDA Agricultural Research Service HQ Research Associate program in Big Data, China Scholarship Council PhD scholarship, and the Centers for Disease Control and Prevention through the Association of Public Health Laboratories.en_US
dc.description.urihttp://f1000research.comen_US
dc.identifier.citationWalker, K., Kalra, D., Lowdon, R et al. The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms [version 1; peer review: 1 approved, 3 approved with reservations] F1000Research 2022, 11:530 https://DOI.org/10.12688/f1000research.110194.1en_US
dc.identifier.issn2046-1402
dc.identifier.other10.12688/f1000research.110194.1
dc.identifier.urihttp://hdl.handle.net/2263/91210
dc.language.isoenen_US
dc.publisherF1000 Research Ltden_US
dc.rights© 2022 Walker K et al. This is an open access article distributed under the terms of the Creative Commons Attribution License.en_US
dc.subjectStructural variantsen_US
dc.subjectPrototypingen_US
dc.subjectOpen-source softwareen_US
dc.titleThe third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organismsen_US
dc.typeArticleen_US

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