Evolution of lifestyles in Capnodiales

dc.contributor.authorAbdollahzadeh, J.
dc.contributor.authorGroenewald, Johannes Zacharias
dc.contributor.authorCoetzee, Martin Petrus Albertus
dc.contributor.authorWingfield, Michael J.
dc.contributor.authorCrous, Pedro W.
dc.date.accessioned2021-03-05T11:24:05Z
dc.date.available2021-03-05T11:24:05Z
dc.date.issued2020-03
dc.descriptionSupplementary Table S1. Details of the isolates included in this study. Type cultures and sequences generated in this study are in bold face.en_ZA
dc.descriptionSupplementary Figure S1. Original phylogenetic tree inferred from a Bayesian analysis based on a concatenated alignment of LSU, TEF-1α and RPB2. Bayesian posterior probabilities (BPP) and maximum likelihood bootstrap support values (MLBS) are indicated at the nodes (BPP/MLBS). The scale bar represents the expected number of changes per site. Families and orders are highlighted in blocks of different colour and indicated to the right of the tree. The tree was rooted with Venturia inaequalis (CBS 594.70).en_ZA
dc.description.abstractThe Capnodiales, which includes fungi known as the sooty moulds, represents the second largest order in Dothideomycetes, encompassing morphologically and ecologically diverse fungi with different lifestyles and modes of nutrition. They include saprobes, plant and human pathogens, mycoparasites, rock-inhabiting fungi (RIF), lichenised, epi-, ecto- and endophytes. The aim of this study was to elucidate the lifestyles and evolutionary patterns of the Capnodiales as well as to reconsider their phylogeny by including numerous new collections of sooty moulds, and using four nuclear loci, LSU, ITS, TEF-1α and RPB2. Based on the phylogenetic results, combined with morphology and ecology, Capnodiales s. lat. is shown to be polyphyletic, representing seven different orders. The sooty moulds are restricted to Capnodiales s. str., while Mycosphaerellales is resurrected, and five new orders including Cladosporiales, Comminutisporales, Neophaeothecales, Phaeothecales and Racodiales are introduced. Four families, three genera, 21 species and five combinations are introduced as new. Furthermore, ancestral reconstruction analysis revealed that the saprobic lifestyle is a primitive state in Capnodiales s. lat., and that several transitions have occurred to evolve lichenised, plant and human parasitic, ectophytic (sooty blotch and flyspeck) and more recently epiphytic (sooty mould) lifestyles.en_ZA
dc.description.departmentBiochemistryen_ZA
dc.description.departmentForestry and Agricultural Biotechnology Institute (FABI)en_ZA
dc.description.departmentGeneticsen_ZA
dc.description.departmentMicrobiology and Plant Pathologyen_ZA
dc.description.librarianam2021en_ZA
dc.description.urihttp://www.studiesinmycology.orgen_ZA
dc.identifier.citationAbdollahzadeh, J., Groenewald, J.Z., Coetzee, M.P.A. et al. 2020, 'Evolution of lifestyles in Capnodiales', Studies in Mycology, vol. 95, pp. 381-414.en_ZA
dc.identifier.issn0166-0616 (print)
dc.identifier.issn1872-9797 (online)
dc.identifier.other10.1016/j.simyco.2020.02.004
dc.identifier.urihttp://hdl.handle.net/2263/78966
dc.language.isoenen_ZA
dc.publisherElsevieren_ZA
dc.rights© 2020 Westerdijk Fungal Biodiversity Institute. Production and hosting by ELSEVIER B.V. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/bync-nd/4.0/).en_ZA
dc.subjectCapnodialesen_ZA
dc.subjectCladosporiumen_ZA
dc.subjectMycosphaerellaen_ZA
dc.subjectMultigene phylogenyen_ZA
dc.subjectSooty mouldsen_ZA
dc.titleEvolution of lifestyles in Capnodialesen_ZA
dc.typeArticleen_ZA

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