Phylogenetic relationships and molecular delimitation of Culicoides Latreille (Diptera: Ceratopogonidae) species in the Afrotropical region : interest for the subgenus Avaritia
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Date
Authors
Bakhoum, M.T.
Labuschagne, Karien
Huber, K.
Fall, M.
Mathieu, B.
Venter, Gert Johannes
Gardes, L.
BAlget, T.
Bouyer, J.
Fall, A.G.
Journal Title
Journal ISSN
Volume Title
Publisher
Wiley
Abstract
Phylogenetic relationships of Culicoides species of the Afrotropical region
are problematic as different authors disagree on the placement of species into specific
subgenera or groups. In this study we sequenced two mitochondrial (COI and
16S rDNA) and two nuclear (CAD and 28S rDNA) gene fragments to reconstruct phylogenetic
relationships within the Avaritia, Remmia and Synhelea subgenera and the
Milnei, Neavei and Similis groups of Culicoides using both Bayesian inference and
maximum-likelihood approaches. Based on phylogenetic trees, we used the bGMYC
(Bayesian General Mixed Yule Coalescent model) and the PTP (Bayesian Poisson Tree
Processes) to investigate species boundaries. All species relationships within the studied
subgenera and groups were well-supported by using morphological characters and
molecular analyses. The subgenus Avaritia includes (i) all of the species of the Imicola
group, as well as the putative new species, C. sp. #22, and we confirmed the monophyly
of this group; (ii) the Dasyops group includes C. kanagai and C. sp. #54 Meiswinkel
(new species), shown to be monophyletic; (iii) the C. sp. #20 belongs to the Orientalis
group; (iv) C. grahamii, C. gulbenkiani and C. kibatiensis. Our results also show that
subgenus Remmia is monophyletic. Relationships of species of the Milnei group were
well-supported and demonstrate the monophyly of this group. Borkent’s classification
for Similis group is confirmed. In addition, C. neavei and C. ovalis (Neavei group) are
placed in the subgenus Synhelea.
Description
Figure S1. Culicoides molecular phylogenetic relationships
using the COI gene. Posterior probabilities and bootstrap
values are presented for the most important nodes (asterisks
indicate PPP 0.95 or BSP 95).
Figure S2. Culicoides molecular phylogenetic relationships using the 16S rDNA gene. Posterior probabilities and bootstrap values are presented for the most important nodes (asterisks indicate PPP 0.95 or BSP 95).
Figure S3. Culicoides molecular phylogenetic relationships using the 28S rDNA gene. Posterior probabilities and bootstrap values are presented for the most important nodes (asterisks indicate PPP 0.95 or BSP 95).
Table S1. Culicoides specimen details, including COI, 16S rDNA and 28S rDNA sequences (-indicate missing sequence), GenBank accession numbers, and sample location information.
Figure S2. Culicoides molecular phylogenetic relationships using the 16S rDNA gene. Posterior probabilities and bootstrap values are presented for the most important nodes (asterisks indicate PPP 0.95 or BSP 95).
Figure S3. Culicoides molecular phylogenetic relationships using the 28S rDNA gene. Posterior probabilities and bootstrap values are presented for the most important nodes (asterisks indicate PPP 0.95 or BSP 95).
Table S1. Culicoides specimen details, including COI, 16S rDNA and 28S rDNA sequences (-indicate missing sequence), GenBank accession numbers, and sample location information.
Keywords
Avaritia, Ceratopogonidae, Culicoides latreille, Diptera, Phylogenetic relationships, Molecular delimitation, Afrotropical region
Sustainable Development Goals
Citation
Bakhoum M.T., Labuschagne K., Huber K. et al. 2018, 'Phylogenetic relationships and molecular delimitation of Culicoides Latreille (Diptera: Ceratopogonidae) species in the Afrotropical region: interest for the subgenus Avaritia', Systematic Entomology, vol. 43, no. 2, pp. 355-371.