Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales) : an overview of families, genera, subgenera, sections, series and species

dc.contributor.authorHoubraken, J.
dc.contributor.authorKocsube, S.
dc.contributor.authorVisagie, Cobus M.
dc.contributor.authorYilmaz, Neriman
dc.contributor.authorWang, X.-C.
dc.contributor.authorMeijer, M.
dc.contributor.authorKraak, B.
dc.contributor.authorHubka, V.
dc.contributor.authorBensch, K.
dc.date.accessioned2021-03-05T11:53:51Z
dc.date.available2021-03-05T11:53:51Z
dc.date.issued2020-03
dc.descriptionSupplementary Fig. S1. Phylogenetic relationship within the Eurotiales based on a combined ML phylogeny using nine loci (RPB1, RPB2, Cct8, Tsr1, CaM, BenA, SSU, LSU, ITS) and a partition containing a binary matrix of indels present in the Tsr1, CaM, BenA and ITS dataset. Bootstrap values are above or below branches. The phylogram is based on 263 species belonging to the order Eurotiales and 16 species from the order Onygenales (used an outgroup).en_ZA
dc.descriptionSupplementary Fig. S2. Combined phylogeny for BenA, CaM and RPB2 data sets showing the phylogenetic relation of species within the genus Hamigera. The new combination Hamigara brevicompacta is shown in bold font. The BI posterior probability (pp) values and bootstrap percentages of the maximum likelihood (ML) analysis are presented at the nodes; fully supported branches are thickened. Values less than 70 % bootstrap support (ML) or less than 0.95 posterior probability (Bayesian analysis) are indicated with a hyphen or not shown. The bar indicates the number of substitutions per site. The phylogram is rooted with Aspergillus glaucus.en_ZA
dc.descriptionSupplementary Fig. S3. Combined phylogeny for BenA, CaM and RPB2 data sets showing the phylogenetic relation of species within the genus Talaromyces. The new combinations Tal. resinae and Tal. striatoconidium are shown in bold font. The BI posterior probability (pp) values and bootstrap percentages of the maximum likelihood (ML) analysis are presented at the nodes; fully supported branches are thickened. Values less than 70 % bootstrap support (ML) or less than 0.95 posterior probability (Bayesian analysis) are indicated with a hyphen or not shown. The bar indicates the number of substitutions per site. The phylogram is rooted with Ascospirella lutea.en_ZA
dc.descriptionSupplementary Fig. S4. Phylogenetic trees based on BenA, CaM and RPB2 sequence data sets showing the relationship between Penicillium cellarum and P. aurantiogriseum. The data of species mentioned in the phylogram can be found in the “accepted species” list in this article. The BI posterior probability (pp) values and bootstrap percentages of the maximum likelihood (ML) analysis are presented at the nodes; fully supported branches are thickened. Values less than 70 % bootstrap support (ML) or less than 0.95 posterior probability (Bayesian analysis) are indicated with a hyphen or not shown. The bar indicates the number of substitutions per site. The phylogram is rooted with Penicillium chrysogenum NRRL 20818.en_ZA
dc.descriptionSupplementary Table S1. Sequence data used for 9-gene phylogeny.en_ZA
dc.description.abstractThe Eurotiales is a relatively large order of Ascomycetes with members frequently having positive and negative impact on human activities. Species within this order gain attention from various research fields such as food, indoor and medical mycology and biotechnology. In this article we give an overview of families and genera present in the Eurotiales and introduce an updated subgeneric, sectional and series classification for Aspergillus and Penicillium. Finally, a comprehensive list of accepted species in the Eurotiales is given. The classification of the Eurotiales at family and genus level is traditionally based on phenotypic characters, and this classification has since been challenged using sequence-based approaches. Here, we re-evaluated the relationships between families and genera of the Eurotiales using a nine-gene sequence dataset. Based on this analysis, the new family Penicillaginaceae is introduced and four known families are accepted: Aspergillaceae, Elaphomycetaceae, Thermoascaceae and Trichocomaceae. The Eurotiales includes 28 genera: 15 genera are accommodated in the Aspergillaceae (Aspergillago, Aspergillus, Evansstolkia, Hamigera, Leiothecium, Monascus, Penicilliopsis, Penicillium, Phialomyces, Pseudohamigera, Pseudopenicillium, Sclerocleista, Warcupiella, Xerochrysium and Xeromyces), eight in the Trichocomaceae (Acidotalaromyces, Ascospirella, Dendrosphaera, Rasamsonia, Sagenomella, Talaromyces, Thermomyces, Trichocoma), two in the Thermoascaceae (Paecilomyces, Thermoascus) and one in the Penicillaginaceae (Penicillago). The classification of the Elaphomycetaceae was not part of this study, but according to literature two genera are present in this family (Elaphomyces and Pseudotulostoma). The use of an infrageneric classification system has a long tradition in Aspergillus and Penicillium. Most recent taxonomic studies focused on the sectional level, resulting in a well-established sectional classification in these genera. In contrast, a series classification in Aspergillus and Penicillium is often outdated or lacking, but is still relevant, e.g., the allocation of a species to a series can be highly predictive in what functional characters the species might have and might be useful when using a phenotype-based identification. The majority of the series in Aspergillus and Penicillium are invalidly described and here we introduce a new series classification. Using a phylogenetic approach, often supported by phenotypic, physiologic and/or extrolite data, Aspergillus is subdivided in six subgenera, 27 sections (five new) and 75 series (73 new, one new combination), and Penicillium in two subgenera, 32 sections (seven new) and 89 series (57 new, six new combinations). Correct identification of species belonging to the Eurotiales is difficult, but crucial, as the species name is the linking pin to information. Lists of accepted species are a helpful aid for researchers to obtain a correct identification using the current taxonomic schemes. In the most recent list from 2014, 339 Aspergillus, 354 Penicillium and 88 Talaromyces species were accepted. These numbers increased significantly, and the current list includes 446 Aspergillus (32 % increase), 483 Penicillium (36 % increase) and 171 Talaromyces (94 % increase) species, showing the large diversity and high interest in these genera. We expanded this list with all genera and species belonging to the Eurotiales (except those belonging to Elaphomycetaceae). The list includes 1 187 species, distributed over 27 genera, and contains MycoBank numbers, collection numbers of type and ex-type cultures, subgenus, section and series classification data, information on the mode of reproduction, and GenBank accession numbers of ITS, beta-tubulin (BenA), calmodulin (CaM) and RNA polymerase II second largest subunit (RPB2) gene sequences.en_ZA
dc.description.departmentBiochemistryen_ZA
dc.description.departmentForestry and Agricultural Biotechnology Institute (FABI)en_ZA
dc.description.departmentGeneticsen_ZA
dc.description.departmentMicrobiology and Plant Pathologyen_ZA
dc.description.librarianam2021en_ZA
dc.description.sponsorshipAgilent for a Thought leader award from Agilent, the Danish National Research Foundation for the Center of Excellence CeMiSt (DNRF137) and the Hungarian Research Fund.en_ZA
dc.description.urihttp://www.studiesinmycology.orgen_ZA
dc.identifier.citationHoubraken, J., Kocsube, S., Visagie, C.M. et al. 2020, 'Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales) : an overview of families, genera, subgenera, sections, series and species', Studies in Mycology, vol. 95, pp. 5-169.en_ZA
dc.identifier.issn0166-0616 (print)
dc.identifier.issn1872-9797 (online)
dc.identifier.other10.1016/j.simyco.2020.05.00
dc.identifier.urihttp://hdl.handle.net/2263/78967
dc.language.isoenen_ZA
dc.publisherElsevieren_ZA
dc.rights© 2020 Westerdijk Fungal Biodiversity Institute. Production and hosting by Elsevier B.V. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/bync-nd/4.0/).en_ZA
dc.subjectClassificationen_ZA
dc.subjectInfrageneric classificationen_ZA
dc.subjectNew taxaen_ZA
dc.subjectNomenclatureen_ZA
dc.subjectPhylogenyen_ZA
dc.subjectPolythetic classesen_ZA
dc.titleClassification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales) : an overview of families, genera, subgenera, sections, series and speciesen_ZA
dc.typeArticleen_ZA

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