Characterization of a novel citrus tristeza virus genotype within three cross-protecting source GFMS12 sub-isolates in South Africa by means of Illumina sequencing
| dc.contributor.author | Zablocki, Olivier | |
| dc.contributor.author | Pietersen, Gerhard | |
| dc.contributor.email | gerhard.pietersen@up.ac.za | en_US |
| dc.date.accessioned | 2014-05-29T07:14:47Z | |
| dc.date.available | 2014-05-29T07:14:47Z | |
| dc.date.issued | 2014-08 | |
| dc.description.abstract | Tristeza disease (caused by citrus tristeza virus, CTV) is currently controlled in South Africa by means of cross-protection. In this study, we characterized the CTV populations of three grapefruit mild strain 12 (GFMS12) single-aphid-transmission-derived sub-isolates at the whole-genome level using Illumina sequencing technology. A novel South African isolate (CT-ZA3, of the T68 genotype) was shown to be the dominant genotype in all GFMS12 sub-isolates tested, along with reads unique to various other genotypes occurring as minor components. Uncertainty remains as to the significance of these minor components. | en_US |
| dc.description.librarian | hb2014 | en_US |
| dc.description.sponsorship | Citrus Research International (CRI) | en_US |
| dc.description.uri | http://link.springer.com/journal/705 | en_US |
| dc.identifier.citation | Zablocki, O & Pietersen, G 2014, 'Characterization of a novel citrus tristeza virus genotype within three cross-protecting source GFMS12 sub-isolates in South Africa by means of Illumina sequencing', Archives of Virology, vol. 159, no. 8, pp. 2133-2139. | en_US |
| dc.identifier.issn | 0304-8608 (print) | |
| dc.identifier.issn | 1432-8798 (online) | |
| dc.identifier.other | 10.1007/s00705-014-2041-3 | |
| dc.identifier.uri | http://hdl.handle.net/2263/39914 | |
| dc.language.iso | en | en_US |
| dc.publisher | Springer | en_US |
| dc.rights | © Springer-Verlag Wien 2014. The original publication is available at : http://link.springer.com/journal/705. | en_US |
| dc.subject | Triteza virus | en_US |
| dc.subject | Next-generation sequencing | en_US |
| dc.subject | Grapefruit mild strain 12 (GFMS12) | en_US |
| dc.title | Characterization of a novel citrus tristeza virus genotype within three cross-protecting source GFMS12 sub-isolates in South Africa by means of Illumina sequencing | en_US |
| dc.type | Postprint Article | en_US |