Characterization of a novel citrus tristeza virus genotype within three cross-protecting source GFMS12 sub-isolates in South Africa by means of Illumina sequencing

dc.contributor.authorZablocki, Olivier
dc.contributor.authorPietersen, Gerhard
dc.contributor.emailgerhard.pietersen@up.ac.zaen_US
dc.date.accessioned2014-05-29T07:14:47Z
dc.date.available2014-05-29T07:14:47Z
dc.date.issued2014-08
dc.description.abstractTristeza disease (caused by citrus tristeza virus, CTV) is currently controlled in South Africa by means of cross-protection. In this study, we characterized the CTV populations of three grapefruit mild strain 12 (GFMS12) single-aphid-transmission-derived sub-isolates at the whole-genome level using Illumina sequencing technol­ogy. A novel South African isolate (CT-ZA3, of the T68 genotype) was shown to be the dominant genotype in all GFMS12 sub-isolates tested, along with reads unique to various other genotypes occurring as minor components. Uncertainty remains as to the significance of these minor components.en_US
dc.description.librarianhb2014en_US
dc.description.sponsorshipCitrus Research International (CRI)en_US
dc.description.urihttp://link.springer.com/journal/705en_US
dc.identifier.citationZablocki, O & Pietersen, G 2014, 'Characterization of a novel citrus tristeza virus genotype within three cross-protecting source GFMS12 sub-isolates in South Africa by means of Illumina sequencing', Archives of Virology, vol. 159, no. 8, pp. 2133-2139.en_US
dc.identifier.issn0304-8608 (print)
dc.identifier.issn1432-8798 (online)
dc.identifier.other10.1007/s00705-014-2041-3
dc.identifier.urihttp://hdl.handle.net/2263/39914
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.rights© Springer-Verlag Wien 2014. The original publication is available at : http://link.springer.com/journal/705.en_US
dc.subjectTriteza virusen_US
dc.subjectNext-generation sequencingen_US
dc.subjectGrapefruit mild strain 12 (GFMS12)en_US
dc.titleCharacterization of a novel citrus tristeza virus genotype within three cross-protecting source GFMS12 sub-isolates in South Africa by means of Illumina sequencingen_US
dc.typePostprint Articleen_US

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