All in the details : a first assessment for the viability of metabarcoding in diet composition analysis of African wild dogs (Lycaon pictus)
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Date
Authors
O'Connor, Bridget C.
Crossey, Bruce Gareth
Hall, Grant
Ganswindt, Andre
Oosthuizen, Carel Jakobus
Journal Title
Journal ISSN
Volume Title
Publisher
Wiley
Abstract
DNA metabarcoding is a contemporary technique in diet composition studies and stands to fill key knowledge gaps left by traditional diet analysis methods. For endangered species such as the African wild dog (Lycaon pictus), the fulfilment of these knowledge gaps presents an opportunity for improved management practices and vulnerability assessments. There are an estimated
~600 African wild dogs remaining in South Africa. These dogs are generally understood to prey upon impala (Aepyceros melampus) and other medium-sized ungulates. Here, we present the first assessment of DNA metabarcoding as a valuable method
for diet composition analysis of this highly social carnivore. DNA from faecal samples collected across seven landscape types in
the Kruger National Park (KNP) was extracted and used to determine the presence of seven unique prey taxa, including novel
species such as the Cape hare (Lepus capensis). Impala was identified as a prey item in all landscape types, complementing the
diet preference prediction made with stable isotope analysis using the same samples and existing understanding of wild dog diet.
Given recommended improvements, the application of DNA metabarcoding in wild dog diet analysis shows promising prospects
for identifying novel prey species and validating previous records of this endangered canids diet.
Description
DATA AVAILABITY STATEMENT: Data is available on Dryad Digital Repository at http://datadryad.org/
stash/share/b0xr3LfSnfsFiJNnZQ3AN0-De4jtypvUbmBvKJ84T7g.
Keywords
Faecal DNA, High-throughput sequencing, Prey composition, Stable isotope analysis, SDG-13: Climate action, SDG-15: Life on land, Deoxyribonucleic acid (DNA), African wild dog (Lycaon pictus), Impala (Aepyceros melampus)
Sustainable Development Goals
SDG-13:Climate action
SDG-15:Life on land
SDG-15:Life on land
Citation
O'Connor, B.C., Crossey, B., Hall, G., Ganswindt, A. and Oosthuizen, C.J. (2024), All in the Details: A First Assessment for the Viability of Metabarcoding in Diet Composition Analysis of African Wild Dogs (Lycaon pictus). Ecology and Evolution 14: e70526. https://doi.org/10.1002/ece3.70526.