Genome and transcriptome-based identification and expression profiling of chemosensory gene families across developmental stages and tissues in Sirex noctilio (Hymenoptera: Siricidae)

dc.contributor.authorPostma, Alisa
dc.contributor.authorKlynsmith, Leandri
dc.contributor.authorDuong, Tuan A.
dc.contributor.authorAllison, Jeremy D.
dc.contributor.authorSmidt, Werner
dc.contributor.authorWaterhouse, Robert M.
dc.contributor.authorLesny, Peter
dc.contributor.authorOeyen, Jan Philip
dc.contributor.authorPetersen, Malte
dc.contributor.authorMartin, Sebastian
dc.contributor.authorLiu, Shanlin
dc.contributor.authorZhou, Xin
dc.contributor.authorZiesmann, Tanja
dc.contributor.authorDonath, Alexander
dc.contributor.authorMayer, Christoph
dc.contributor.authorMisof, Bernhard
dc.contributor.authorNiehuis, Oliver
dc.contributor.authorPeters, Ralph S.
dc.contributor.authorPodsiadlowski, Lars
dc.contributor.authorCoetzee, Martin Petrus Albertus
dc.contributor.authorJoubert, Fourie
dc.contributor.authorSlippers, Bernard
dc.contributor.emailbernard.slippers@fabi.up.ac.za
dc.date.accessioned2026-03-17T04:38:36Z
dc.date.available2026-03-17T04:38:36Z
dc.date.issued2026
dc.descriptionDATA AVAILABILITY STATEMENT : Raw RNA-sequencing data are available at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database under BioProject ID PRJNA982519: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA982519/ (Postma et al., 2025a). Genome assembly, annotation and predicted protein sequences: https://doi.org/10.5061/dryad.tdz08kqbp (Postma et al., 2025b). All code to reproduce the results and figures is available at https://github.com/AlisaPostma/SirexChemosensation (Postma et al., 2025c). SUPPORTING INFORMATION FIGURE S1. Heatmap depicting differential expression results for OR genes in Sirex noctilio. FIGURE S2. Heatmap depicting differential expression results for GR genes in Sirex noctilio. FIGURE S3. Phylogenetic tree of GR genes from Sirex noctilio (Snoc), Anopheles gambiae (Agam), Apis mellifera (Amel), Athalia rosae (Aros), Bombyx mori (Bmor), Bombus terristris (Bter), Cephus cinctus (Ccin), Drosophila melanogaster (Dmel), Nasonia vitripennis (Nvit), Orussus abietinus (Oabi), Pogonomyrmex barbatus (Pbar) and Tribolium castaneum (Tcas). Sub-families of interest are highlighted and include: pheromone receptors, sugar and fructose receptors and carbon dioxide receptors. FIGURE S4. Heatmap depicting differential expression results for IR genes in Sirex noctilio. FIGURE S5. Phylogenetic tree of IR genes from Sirex noctilio (Snoc), Apis mellifera (Amel), Athalia rosae (Aros), Bombus terristris (Bter), Cephus cinctus (Ccin), Drosophila melanogaster (Dmel), Nasonia vitripennis (Nvit), Orussus abietinus (Oabi) and Pogonomyrmex barbatus (Pbar). Sub-families of interest are highlighted and include: Divergent receptors and Co-receptors (Ir8a and Ir25a). FIGURE S6. Heatmap depicting differential expression results for OBP genes in Sirex noctilio. FIGURE S7. Phylogenetic tree of OBP genes from Sirex noctilio (Snoc), Apis mellifera (Amel), Cephus cinctus (Ccin), Nasonia vitripennis (Nvit) and Solenopsis invicta (Sinv). Sub-families of interest are highlighted and include a bee-specific clade, a wasp-specific clade and an ant-specific clade. FIGURE S8. GSVA enrichment of the Magenta module. FIGURE S9. Heatmap of GSVA enrichment of the Magenta module. FIGURE S10. Volcano plot. TABLE S1. (a) RNA sample sequencing quality metrics. (b) RNA sequencing library information. TABLE S2. DNA sample and genome sequencing information. TABLE S3. Chemosensation gene information. TABLE S4. Information on sequenced Symphyta genomes. TABLE S5. Numbers of chemosensory genes in different insect species. TABLE S6. Mapping rate of RNA libraries to the Sirex genome. TABLE S7. Genes in magenta module. FILE S1. DNA extraction phenol chloroform protocol. FILE S2. Total RNA extraction trizol. FILE S3. Surface sterilization and sterilising wash procedures for RNA extraction from insects. FILE S4. Gut removal from insects.
dc.description.abstractThe Sirex woodwasp (Sirex noctilio; Hymenoptera: Siricidae) is among the most destructive invasive pests affecting Pinus plantations worldwide. Chemosensory systems offer promising targets for pest control strategies. The identification and characterization of chemosensation genes in non-model, economically significant insects such as S. noctilio, is an important first step towards the development of such control methods. Here we sequenced and assembled a draft genome of S. noctilio and performed RNA-sequencing of 15 olfactory and non-olfactory tissues to study the expression patterns of chemosensation-related genes. Specific genes, such as SnocOR16 and SnocSNMP1, displayed tissue- and sex-specific expression patterns, making them particularly intriguing for their potential roles in chemosensation and oviposition. As woodwasps and their related lineages form a sister group to the majority of other Hymenoptera, including Apocrita, insights into their gene repertoires are crucial for tracing the evolutionary history of chemosensory multigene families of this ecologically and economically significant insect order. This study enhances our understanding of the molecular mechanisms underlying S. noctilio chemosensation, paving the way for further research in chemical ecology and the functional characterization of S. noctilio chemosensation genes.
dc.description.departmentBiochemistry, Genetics and Microbiology (BGM)
dc.description.departmentForestry and Agricultural Biotechnology Institute (FABI)
dc.description.departmentZoology and Entomology
dc.description.librarianhj2026
dc.description.sdgSDG-15: Life on land
dc.description.sponsorshipDSTI NRF Centre of Excellence in Plant Health Biotechnology; Tree Protection Cooperative Programme in South Africa; Leibniz Graduate School on Genomic Biodiversity Research; German Research Foundation (DFG); Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung.
dc.description.urihttps://resjournals.onlinelibrary.wiley.com/journal/13652583
dc.identifier.citationPostma, A., Klynsmith, L., Duong, T.A., et al. 2026, 'Genome and transcriptome-based identification and expression profiling of chemosensory gene families across developmental stages and tissues in Sirex noctilio (Hymenoptera: Siricidae)', Insect Molecular Biology, doi : 10.1111/imb.70029.
dc.identifier.issn0962-1075 (print)
dc.identifier.issn1365-2583 (online)
dc.identifier.other10.1111/imb.70029
dc.identifier.urihttp://hdl.handle.net/2263/109017
dc.language.isoen
dc.publisherWiley
dc.rights© 2026 The Author(s). Insect Molecular Biology published by John Wiley & Sons Ltd on behalf of Royal Entomological Society. This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License.
dc.subjectSirex woodwasp (Sirex noctilio)
dc.subjectChemosensory
dc.subjectTranscriptome
dc.subjectSirex noctilio
dc.subjectSawfly
dc.subjectPine
dc.subjectInvasive pest
dc.subjectHymenoptera
dc.subjectGenome
dc.subjectDifferential gene expression
dc.titleGenome and transcriptome-based identification and expression profiling of chemosensory gene families across developmental stages and tissues in Sirex noctilio (Hymenoptera: Siricidae)
dc.typeArticle

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