Botryosphaeriaceae partially overlap on asymptomatic and symptomatic tissues of Anacardiaceae in agroecosystems and conservation areas in northern South Africa
| dc.contributor.author | Slippers, Bernard | |
| dc.contributor.author | Ramabulana, Elelwani | |
| dc.contributor.author | Coetzee, Martin Petrus Albertus | |
| dc.contributor.email | bernard.slippers@fabi.up.ac.za | en_US |
| dc.date.accessioned | 2024-07-22T11:26:29Z | |
| dc.date.available | 2024-07-22T11:26:29Z | |
| dc.date.issued | 2024-06 | |
| dc.description | SUPPLEMENTARY MATERIAL : FIG. S1. Maximum likelihood phylogenetic tree generated from the ITS sequence dataset. Isolates from asymptomatic branches are indicated with (●) and those from symptomatic branches are indicated with (▲). T = ex-type. Bootstrap support values above 60 % and PP values equal or above 0.95 are shown at the nodes. The tree was rooted to sequences of Melanops tulasnei. FIG. S2. Maximum likelihood phylogenetic tree generated from analyses of the tef-1α dataset. Isolates from asymptomatic branches are indicated with (●) and those from symptomatic branches are indicated with (▲). T = ex-type. Bootstrap support values (> 60 %) and PP values (≥ 0.95) are shown on the nodes. The tree was rooted to Melanops tulasnei FIG. S3. Maximum likelihood phylogenetic tree based on analyses of the β-tub dataset. Isolates from asymptomatic branches are indicated with (●) and those from symptomatic branches are indicated with (▲). T = ex-type. Bootstrap support values (> 60 %) and PP values (≥ 0.95) are shown on the nodes. The tree was rooted to Melanops tulasnei. FIG. S4. Maximum likelihood phylogenetic tree based on analyses of the rpb2 dataset. Isolates from asymptomatic branches are indicated with (●) and those from symptomatic branches are indicated with (▲). T = ex-type. Bootstrap support (> 60 %) and PP values (≥ 0.95) are shown on the nodes. The tree was rooted to Melanops tulasnei. TABLE S1. Strain numbers, origin and GenBank accession number for reference strains used for phylogenetic analyses. TABLE S2. Representative fungal isolates obtained from asymptomatic and symptomatic branches of Anacardiaceae included in phylogenetic analyses. Isolate numbers in bold indicate isolates sequenced in this study. Isolates from asymptomatic tissue are from Ramabulana et al. (2022). | en_US |
| dc.description.abstract | Members of the Botryosphaeriaceae are well-known endophytes and stress-related pathogens. We recently characterised the diversity of Botryosphaeriaceae in healthy tissues of three tree species in the Anacardiaceae, namely Sclerocarya birrea, Mangifera indica and Lannea schweinfurthii. Here we ask how that diversity compares with the Botryosphaeriaceae diversity associated with dieback on those tree species. Samples were collected from agroecosystems (Tshikundamalema and Tshipise in Limpopo) and conservation areas (Nwanedi and the Mapungubwe National Park in Limpopo and the Kruger National Park in Mpumalanga) ecosystems. Species were characterised using multigene sequence data and morphological data. Diplodia allocellula, Dothiorella brevicollis, Do. viticola, Lasiodiplodia crassispora, L. mahajangana and Neofusicoccum parvum occurred on both asymptomatic and symptomatic samples. Dothiorella dulcispinea, L. gonubiensis and L. exigua, as well as a previously unknown species described here as Oblongocollomyces ednahkunjekuae sp. nov., only occurred in asymptomatic branches. An interesting aspect of the biology of O. ednahkunjekuaeae is that it appears to be adapted to higher temperatures, with an optimum growth at 30 °C, and faster growth at 35 °C than at 25 °C. Lasiodiplodia pseudotheobromae only occurred in symptomatic branches. Neofusicoccum parvum was notably absent from conservation areas, and in agroecosystem it was most common on M. indica. Only L. crassispora and L. mahajangana overlapped on all three tree species and were the dominant species associated with dieback. These results show that not all Botryosphaeriaceae occurring asymptomatically in an area contribute equally to disease development on a related group of hosts, and that environmental disturbance plays a significant role in the distribution of N. parvum. | en_US |
| dc.description.department | Biochemistry | en_US |
| dc.description.department | Forestry and Agricultural Biotechnology Institute (FABI) | en_US |
| dc.description.department | Genetics | en_US |
| dc.description.department | Microbiology and Plant Pathology | en_US |
| dc.description.librarian | hj2024 | en_US |
| dc.description.sdg | SDG-15:Life on land | en_US |
| dc.description.sponsorship | The DSI NRF Centre of Excellence in Plant Health Biotechnology, the Tree Protection Co-operative Programme and the University of Pretoria. | en_US |
| dc.description.uri | https://fuse-journal.org | en_US |
| dc.identifier.citation | Slippers, B., Ramabulana, E. & Coetzee, M.P.A. (2024). Botryosphaeriaceae partially overlap on asymptomatic and symptomatic tissues of Anacardiaceae in agroecosystems and conservation areas in northern South Africa. Fungal Systematics and Evolution 13: 131–142. doi: 10.3114/fuse.2024.13.07. | en_US |
| dc.identifier.issn | 2589-3823 (print) | |
| dc.identifier.issn | 2589-3831 (online) | |
| dc.identifier.other | 10.3114/fuse.2024.13.07 | |
| dc.identifier.uri | http://hdl.handle.net/2263/97147 | |
| dc.language.iso | en | en_US |
| dc.publisher | Westerdijk Fungal Biodiversity Institute | en_US |
| dc.rights | © 2024 Westerdijk Fungal Biodiversity Institute. This article is Open Access under the terms of the Creative Commons CC BY-NC-ND licence. | en_US |
| dc.subject | Ecology | en_US |
| dc.subject | Endophyte | en_US |
| dc.subject | Latent pathogen | en_US |
| dc.subject | New taxon | en_US |
| dc.subject | Systematics | en_US |
| dc.subject | SDG-15: Life on land | en_US |
| dc.subject | Botryosphaeriaceae | en_US |
| dc.subject | Anacardiaceae | en_US |
| dc.subject | Lannea schweinfurthii | en_US |
| dc.subject | Mangifera indica | en_US |
| dc.subject | Sclerocarya birrea | en_US |
| dc.subject | Agroecosystems | en_US |
| dc.subject | Conservation areas | en_US |
| dc.title | Botryosphaeriaceae partially overlap on asymptomatic and symptomatic tissues of Anacardiaceae in agroecosystems and conservation areas in northern South Africa | en_US |
| dc.type | Article | en_US |
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