Spirocerca lupi draft genome, vaccine and anthelmintic targets

dc.contributor.authorRothmann-Meyer, Wiekolize
dc.contributor.authorNaidoo, Kershney
dc.contributor.authorDe Waal, Pamela Jean
dc.contributor.emailpam.dewaal@up.ac.zaen_US
dc.date.accessioned2024-09-10T08:24:28Z
dc.date.available2024-09-10T08:24:28Z
dc.date.issued2024-09
dc.descriptionSUPPLEMENTARY MATERIAL 1 : S1 Known anthelmintic targets. SUPPLEMENTARY MATERIAL 2 : S2 New anthelmintic targets: Bottom up search. SUPPLEMENTARY MATERIAL 3 : S3 Known vaccine and immune modulators. SUPPLEMENTARY MATERIAL 4 : S4 New Vaccine targets. SUPPLEMENTARY MATERIAL 5 : S5 Singletons KEGG results. SUPPLEMENTARY MATERIAL 6 : S6 Singletons InterPro Scan results. SUPPLEMENTARY MATERIAL 7 : S7 Canid Parasites and C elegans Orthovenn2. SUPPLEMENTARY MATERIAL 8 : S8 Canid Parasites only Orthovenn2.en_US
dc.description.abstractSpirocerca lupi is a parasitic nematode affecting predominantly domestic dogs. It causes spirocercosis, a disease that is often fatal. The assembled draft genome of S. lupi consists of 13,627 predicted protein-coding genes and is approximately 150 Mb in length. Several known anthelmintic gene targets such as for β-Tubulin, glutamate, and GABA receptors as well as known vaccine gene targets such as cysteine protease inhibitor and cytokines were identified in S. lupi by comparing orthologs of C. elegans anthelmintic gene targets as well as orthologs to known vaccine candidates. New anthelmintic targets were predicted through an inclusion-exclusion strategy and new vaccine targets were predicted through an immunoinformatics approach. New anthelminthic targets include DNA-directed RNA polymerases, chitin synthase, polymerases, and other enzymes. New vaccine targets include cuticle collagens. These gene targets provide a starting platform for new drug identification and vaccine design.en_US
dc.description.departmentBiochemistryen_US
dc.description.departmentGeneticsen_US
dc.description.departmentMicrobiology and Plant Pathologyen_US
dc.description.librarianhj2024en_US
dc.description.sdgSDG-03:Good heatlh and well-beingen_US
dc.description.sponsorshipThe University of Pretoria.en_US
dc.description.urihttps://www.elsevier.com/locate/molbioparaen_US
dc.identifier.citationRothmann-Meyer, W., Naidoo, K. & De Waal, P.J. 2024, 'Spirocerca lupi draft genome, vaccine and anthelmintic targets', Molecular and Biochemical Parasitology, vol. 259, art. 111632, pp. 1-9, doi : 10.1016/j.molbiopara.2024.111632.en_US
dc.identifier.issn0166-6851 (print)
dc.identifier.issn1872-9428 (online)
dc.identifier.other10.1016/j.molbiopara.2024.111632
dc.identifier.urihttp://hdl.handle.net/2263/98097
dc.language.isoenen_US
dc.publisherElsevieren_US
dc.rights© 2024 The Author(s). Published by Elsevier B.V. This is an open access article under the CC BY-NC license.en_US
dc.subjectSpirocerca lupi genomeen_US
dc.subjectSpirocerca lupi anthelminticen_US
dc.subjectSpirocerca lupi vaccineen_US
dc.subjectGastrointestinal parasiteen_US
dc.subjectInclusion-exclusionen_US
dc.subjectImmunoinformaticen_US
dc.subjectSDG-03: Good health and well-beingen_US
dc.titleSpirocerca lupi draft genome, vaccine and anthelmintic targetsen_US
dc.typeArticleen_US

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