Otolith shape analysis as a tool for species identification and management of cryptic congeners in the northern Benguela ocean warming hotspot

dc.contributor.authorWilhelm, M.R.
dc.contributor.authorJagger, C.E.
dc.contributor.authorNghipangelwa, N.M.
dc.contributor.authorPringle, B.A.
dc.contributor.authorShaw, P.W.
dc.contributor.authorPotts, W.M.
dc.contributor.authorHenriques, Romina
dc.contributor.authorMcKeown, N.J.
dc.date.accessioned2025-01-20T12:20:09Z
dc.date.issued2025-01
dc.descriptionDATA AVAILABILITY : A link to all data is included in the manuscript.en_US
dc.description.abstractAdaptive management is critical to maintaining resilient fisheries in our rapidly changing ocean environments. However, establishing appropriate and cost-effective monitoring programmes that adequately capture the responses of fisheries to climate change have been elusive. The coastal waters of central and northern Namibia are a global hotspot of ocean warming, with several responses by fish impacting its coastal fisheries. One documented change is a poleward distributional shift of the west coast dusky kob, Argyrosomus coronus into Namibia, where it has begun to hybridize with the congeneric A. inodorus. With considerably different life histories, it is critical that managers can differentiate between these species and the hybrids to appropriately manage the most important recreational and commercial linefish species (bycatch and biomass) in Namibia. In this paper, we used otolith shape analysis, Linear Discriminant Analyses (LDA) to show that otolith shape can be used to distinguish between species and their putative hybrids, identified based on mitochondrial DNA and nuclear microsatellite data. A total of 342 individuals from northern and central Namibia (northern Benguela) between 18.5 and 22.7°S were genetically identified, with a subsample of 217 paired with otolith shape analysis. Otolith shape analyses with LDA and leave-one-out cross validation showed successful species identification at 96.3 % accuracy, and improved accuracy of hybrid identification compared to using body morphology by 50 %. The Fourier descriptors provided excellent classification accuracy for separating A. coronus from A. inodorus (and putative hybrids, but poorer classification accuracy for separating the hybrids from A. inodorus (4/8). We thus recommend using otolith shape analysis for distinguishing the two species but suggest that genetic identification is still required to monitor hybridization. Monitoring for adaptive management should therefore include routine otolith collection and species classification to improve stock assessment and promote the development of appropriate management strategies for this important fishery in the northern Benguela.en_US
dc.description.departmentBiochemistry, Genetics and Microbiology (BGM)en_US
dc.description.embargo2025-12-30
dc.description.librarianhj2024en_US
dc.description.sdgSDG-14:Life below wateren_US
dc.description.sponsorshipThe Ministry of Fisheries and Marine Resources, Namibia; Department of Fisheries and Ocean Sciences, University of Namibia; the Department of Ichthyology and Fisheries Sciences, Rhodes University, South Africa; the Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, UK; the Marine Genomics Group, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, South Africa; UKRI Global Challenges Research Fund One Ocean Hub - flexible fund and Wild Skeleton Coast Adventure Tours.en_US
dc.description.urihttp://www.elsevier.com/locate/fishresen_US
dc.identifier.citationWilhelm, M.R., Jagger, C.E., Nghipangelwa, N.M. et al. 2025, 'Otolith shape analysis as a tool for species identification and management of cryptic congeners in the northern Benguela ocean warming hotspot, Fisheries Research, vol. 281, art. 107262, pp. 1-11. doi : 10.1016/j.fishres.2024.107262.en_US
dc.identifier.issn0165-7836 (print)
dc.identifier.issn1872-6763 (online)
dc.identifier.other10.1016/j.fishres.2024.107262
dc.identifier.urihttp://hdl.handle.net/2263/100194
dc.language.isoenen_US
dc.publisherElsevieren_US
dc.rightsCrown Copyright © 2024 Published by Elsevier B.V. All rights are reserved, including those for text and data mining, AI training, and similar technologies. Notice : this is the author’s version of a work that was accepted for publication in Fisheries Research. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. A definitive version was subsequently published in Fisheries Research, vol. 281, art. 107262, pp. 1-11. doi : 10.1016/j.fishres.2024.107262.en_US
dc.subjectOtolith shapeen_US
dc.subjectElliptic Fourier analysisen_US
dc.subjectLinear discriminant analysisen_US
dc.subjectHybridizationen_US
dc.subjectLine fishery managementen_US
dc.subjectSDG-14: Life below wateren_US
dc.titleOtolith shape analysis as a tool for species identification and management of cryptic congeners in the northern Benguela ocean warming hotspoten_US
dc.typePostprint Articleen_US

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