The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms

Walker, Kimberly; Kalra, Divya; Lowdon, Rebecca; Chen, Guangyi; Molik, David; Soto, Daniela C.; Dabbaghie, Fawaz; Al Khleifat, Ahmad; Mahmoud, Medhat; Paulin, Luis F.; Raza, Muhammad Sohail; Pfeifer, Susanne P.; Agustinho, Daniel Paiva; Aliyev, Elbay; Avdeyev, Pavel; Barrozo, Enrico R.; Behera, Sairam; Billingsley, Kimberley; Chong, Li Chuin; Choubey, Deepak; De Coster, Wouter; Fu, Yilei; Gener, Alejandro R.; Hefferon, Timothy; Henke, David Morgan; Hops, Wolfram; Illarionova, Anastasia; Jochum, Michael D.; Jose, Maria; Kesharwani, Rupesh K.; Kolora, Sree Rohit Raj; Kubica, Jedrzej; Lakra, Priya; Lattimer, Damaris; Liew, Chia-Sin; Lo, Bai-Wei; Lo, Chunhsuan; Lotter, Anneri; Majidian, Sina; Mendem, Suresh Kumar; Mondal, Rajarshi; Ohmiya, Hiroko; Parvin, Nasrin; Peralta, Carolina; Poo, Chi-Lam; Prabhakaran, Ramanandan; Saitou, Marie; Sammi, Aditi; Sanio, Philippe; Sapoval, Nicolae; Syed, Najeeb; Treangen, Todd; Wang, Gaojianyong; Xu, Tiancheng; Yang, Jianzhi; Zhang, Shangzhe; Zhou, Weiyu; Sedlazeck, Fritz J.; Busby, Ben

dc.contributor.author	Walker, Kimberly
dc.contributor.author	Kalra, Divya
dc.contributor.author	Lowdon, Rebecca
dc.contributor.author	Chen, Guangyi
dc.contributor.author	Molik, David
dc.contributor.author	Soto, Daniela C.
dc.contributor.author	Dabbaghie, Fawaz
dc.contributor.author	Al Khleifat, Ahmad
dc.contributor.author	Mahmoud, Medhat
dc.contributor.author	Paulin, Luis F.
dc.contributor.author	Raza, Muhammad Sohail
dc.contributor.author	Pfeifer, Susanne P.
dc.contributor.author	Agustinho, Daniel Paiva
dc.contributor.author	Aliyev, Elbay
dc.contributor.author	Avdeyev, Pavel
dc.contributor.author	Barrozo, Enrico R.
dc.contributor.author	Behera, Sairam
dc.contributor.author	Billingsley, Kimberley
dc.contributor.author	Chong, Li Chuin
dc.contributor.author	Choubey, Deepak
dc.contributor.author	De Coster, Wouter
dc.contributor.author	Fu, Yilei
dc.contributor.author	Gener, Alejandro R.
dc.contributor.author	Hefferon, Timothy
dc.contributor.author	Henke, David Morgan
dc.contributor.author	Hops, Wolfram
dc.contributor.author	Illarionova, Anastasia
dc.contributor.author	Jochum, Michael D.
dc.contributor.author	Jose, Maria
dc.contributor.author	Kesharwani, Rupesh K.
dc.contributor.author	Kolora, Sree Rohit Raj
dc.contributor.author	Kubica, Jedrzej
dc.contributor.author	Lakra, Priya
dc.contributor.author	Lattimer, Damaris
dc.contributor.author	Liew, Chia-Sin
dc.contributor.author	Lo, Bai-Wei
dc.contributor.author	Lo, Chunhsuan
dc.contributor.author	Lotter, Anneri
dc.contributor.author	Majidian, Sina
dc.contributor.author	Mendem, Suresh Kumar
dc.contributor.author	Mondal, Rajarshi
dc.contributor.author	Ohmiya, Hiroko
dc.contributor.author	Parvin, Nasrin
dc.contributor.author	Peralta, Carolina
dc.contributor.author	Poo, Chi-Lam
dc.contributor.author	Prabhakaran, Ramanandan
dc.contributor.author	Saitou, Marie
dc.contributor.author	Sammi, Aditi
dc.contributor.author	Sanio, Philippe
dc.contributor.author	Sapoval, Nicolae
dc.contributor.author	Syed, Najeeb
dc.contributor.author	Treangen, Todd
dc.contributor.author	Wang, Gaojianyong
dc.contributor.author	Xu, Tiancheng
dc.contributor.author	Yang, Jianzhi
dc.contributor.author	Zhang, Shangzhe
dc.contributor.author	Zhou, Weiyu
dc.contributor.author	Sedlazeck, Fritz J.
dc.contributor.author	Busby, Ben
dc.date.accessioned	2023-06-27T06:08:31Z
dc.date.available	2023-06-27T06:08:31Z
dc.date.issued	2022
dc.description	DATA AVAILABILITY : The data used for these projects were obtained from publicly accessible repositories and are available in Table 1.	en_US
dc.description.abstract	In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics.	en_US
dc.description.department	Biochemistry	en_US
dc.description.librarian	am2023	en_US
dc.description.sponsorship	The National Library of Medicine, ALS Association Milton Safenowitz Research Fellowship, The Motor Neurone Disease Association (MNDA) Fellowship, The NIHR Maudsley Biomedical Research Centre, a National Science Foundation CAREER grant, The Research Council of Norway, a postdoctoral fellowship from the FWO, the Swiss National Science Foundation, the USDA Agricultural Research Service HQ Research Associate program in Big Data, China Scholarship Council PhD scholarship, and the Centers for Disease Control and Prevention through the Association of Public Health Laboratories.	en_US
dc.description.uri	http://f1000research.com	en_US
dc.identifier.citation	Walker, K., Kalra, D., Lowdon, R et al. The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms [version 1; peer review: 1 approved, 3 approved with reservations] F1000Research 2022, 11:530 https://DOI.org/10.12688/f1000research.110194.1	en_US
dc.identifier.issn	2046-1402
dc.identifier.other	10.12688/f1000research.110194.1
dc.identifier.uri	http://hdl.handle.net/2263/91210
dc.language.iso	en	en_US
dc.publisher	F1000 Research Ltd	en_US
dc.rights	© 2022 Walker K et al. This is an open access article distributed under the terms of the Creative Commons Attribution License.	en_US
dc.subject	Structural variants	en_US
dc.subject	Prototyping	en_US
dc.subject	Open-source software	en_US
dc.title	The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms	en_US
dc.type	Article	en_US