Supplementary Information 1: Multi-species coalescent model phylogeny
DOI: 10.7717/peerj.6698/supp-1
Supplementary Information 2: Consensus network of 1,357 gene trees
DOI: 10.7717/peerj.6698/supp-2
Supplementary Information 3: Neighbour-Joining phylogeny from ANI-based distances
DOI: 10.7717/peerj.6698/supp-3
Supplementary Information 4: AML concatenated phylogenies constructed after the exclusion of backbone supporting genes and genes with no signal
DOI: 10.7717/peerj.6698/supp-4
Supplementary Information 5: AML concatenated phylogenies of backbone supporting genes and genes with no signal
DOI: 10.7717/peerj.6698/supp-5
Supplementary Information 6: Strict consensus trees of subset datasets
DOI: 10.7717/peerj.6698/supp-6
Supplementary Information 7: Python script
Raw Data: FastTree python script for the construction of individual gene trees
DOI: 10.7717/peerj.6698/supp-7
Supplementary Information 8: NeighborNet Network
Raw Data: A nexus file for the NeighborNet Network constructed from the concatenated nucleotide data matrix (Fig. 2).
DOI: 10.7717/peerj.6698/supp-8
Supplementary Information 9: Consensus Network
Raw data: A nexus file for the consensus network constructed from the individual gene trees (Fig. S2).
DOI: 10.7717/peerj.6698/supp-9
Supplementary Information 10: Backbone supporting and no signal gene trees
Datasets and trees for the individual gene trees marked as supporting the backbone and those with no signal.
DOI: 10.7717/peerj.6698/supp-10
Supplementary Information 11: Nucleotides with conflicting signal
Nucleotide positions with conflicting signal as determined from the NeighborNet.
DOI: 10.7717/peerj.6698/supp-11
Supplementary Information 12: Recombination detection data
Results obtained from the recombination detection program regarding potential recombination breakpoints.
DOI: 10.7717/peerj.6698/supp-12
Supplementary Information 13: Randomised subset datasets
Data pertaining to the randomised subset datasets constructed from 20, 50, 60, 70, 80, 90, 100, 110 and 120 randomly selected genes.
DOI: 10.7717/peerj.6698/supp-13