dc.contributor.author |
Bakhoum, M.T.
|
|
dc.contributor.author |
Labuschagne, Karien
|
|
dc.contributor.author |
Huber, K.
|
|
dc.contributor.author |
Fall, M.
|
|
dc.contributor.author |
Mathieu, B.
|
|
dc.contributor.author |
Venter, Gert Johannes
|
|
dc.contributor.author |
Gardes, L.
|
|
dc.contributor.author |
BAlget, T.
|
|
dc.contributor.author |
Bouyer, J.
|
|
dc.contributor.author |
Fall, A.G.
|
|
dc.contributor.author |
Gimonneau, G.
|
|
dc.contributor.author |
Garros, C.
|
|
dc.date.accessioned |
2019-08-26T10:32:44Z |
|
dc.date.available |
2019-08-26T10:32:44Z |
|
dc.date.issued |
2018-04 |
|
dc.description |
Figure S1. Culicoides molecular phylogenetic relationships
using the COI gene. Posterior probabilities and bootstrap
values are presented for the most important nodes (asterisks
indicate PPP 0.95 or BSP 95). |
en_ZA |
dc.description |
Figure S2. Culicoides molecular phylogenetic relationships
using the 16S rDNA gene. Posterior probabilities and bootstrap
values are presented for the most important nodes
(asterisks indicate PPP 0.95 or BSP 95). |
en_ZA |
dc.description |
Figure S3. Culicoides molecular phylogenetic relationships
using the 28S rDNA gene. Posterior probabilities and bootstrap
values are presented for the most important nodes
(asterisks indicate PPP 0.95 or BSP 95). |
en_ZA |
dc.description |
Table S1. Culicoides specimen details, including COI,
16S rDNA and 28S rDNA sequences (-indicate missing
sequence), GenBank accession numbers, and sample
location information. |
en_ZA |
dc.description.abstract |
Phylogenetic relationships of Culicoides species of the Afrotropical region
are problematic as different authors disagree on the placement of species into specific
subgenera or groups. In this study we sequenced two mitochondrial (COI and
16S rDNA) and two nuclear (CAD and 28S rDNA) gene fragments to reconstruct phylogenetic
relationships within the Avaritia, Remmia and Synhelea subgenera and the
Milnei, Neavei and Similis groups of Culicoides using both Bayesian inference and
maximum-likelihood approaches. Based on phylogenetic trees, we used the bGMYC
(Bayesian General Mixed Yule Coalescent model) and the PTP (Bayesian Poisson Tree
Processes) to investigate species boundaries. All species relationships within the studied
subgenera and groups were well-supported by using morphological characters and
molecular analyses. The subgenus Avaritia includes (i) all of the species of the Imicola
group, as well as the putative new species, C. sp. #22, and we confirmed the monophyly
of this group; (ii) the Dasyops group includes C. kanagai and C. sp. #54 Meiswinkel
(new species), shown to be monophyletic; (iii) the C. sp. #20 belongs to the Orientalis
group; (iv) C. grahamii, C. gulbenkiani and C. kibatiensis. Our results also show that
subgenus Remmia is monophyletic. Relationships of species of the Milnei group were
well-supported and demonstrate the monophyly of this group. Borkent’s classification
for Similis group is confirmed. In addition, C. neavei and C. ovalis (Neavei group) are
placed in the subgenus Synhelea. |
en_ZA |
dc.description.department |
Veterinary Tropical Diseases |
en_ZA |
dc.description.department |
Zoology and Entomology |
en_ZA |
dc.description.librarian |
am2019 |
en_ZA |
dc.description.sponsorship |
UMR 117 ASTRE, Cirad. M.T.B. was
granted by the Islamic Development Bank. M.T.B. would like
to thank Christine Chevillon, IRD, UR 224 MIVEGEC, Montpellier,
France; and Nabil Haddad, Laboratory of Immunology
and Vector Borne Diseases, Lebanese University. |
en_ZA |
dc.description.uri |
https://onlinelibrary.wiley.com/journal/13653113 |
en_ZA |
dc.identifier.citation |
Bakhoum M.T., Labuschagne K., Huber K. et al. 2018, 'Phylogenetic relationships and molecular delimitation of Culicoides Latreille (Diptera: Ceratopogonidae) species in the Afrotropical region: interest for the subgenus Avaritia', Systematic Entomology, vol. 43, no. 2, pp. 355-371. |
en_ZA |
dc.identifier.issn |
0307-6970 (print) |
|
dc.identifier.issn |
1365-3113 (online) |
|
dc.identifier.other |
10.1111/syen.12279 |
|
dc.identifier.uri |
http://hdl.handle.net/2263/71203 |
|
dc.language.iso |
en |
en_ZA |
dc.publisher |
Wiley |
en_ZA |
dc.rights |
© 2017 The Authors. Systematic Entomology published by John Wiley & Sons Ltd on behalf of Royal Entomological Society. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs License. |
en_ZA |
dc.subject |
Avaritia |
en_ZA |
dc.subject |
Ceratopogonidae |
en_ZA |
dc.subject |
Culicoides latreille |
en_ZA |
dc.subject |
Diptera |
en_ZA |
dc.subject |
Phylogenetic relationships |
en_ZA |
dc.subject |
Molecular delimitation |
en_ZA |
dc.subject |
Afrotropical region |
en_ZA |
dc.title |
Phylogenetic relationships and molecular delimitation of Culicoides Latreille (Diptera: Ceratopogonidae) species in the Afrotropical region : interest for the subgenus Avaritia |
en_ZA |
dc.type |
Article |
en_ZA |