Figure S1. RT-PCR validation of eight novel CDS candidates using agarose gel. Lane 1. 1 kb DNA ladder, Lane 2 and 3. Novel1253 in the tolerant and susceptible cultivars, respectively, Lane 4 and 5. Novel917 in the tolerant and susceptible cultivars, respectively, Lane 6, Novel806 in susceptible cultivar, Lane 7 and 9. Novel2142 in the susceptible cultivar, Lane 8. Novel1481 in the tolerant cultivar, Lane 10. Novel750 in the susceptible cultivar, Lane 11. Novel2049 in the susceptible cultivar, Lane 12. Novel2769 in the susceptible cultivar.
Table S1. Mapping statistics.
Table S2. List of identified novel CDS gene candidates.
Table S3. List of differentially expressed genes at each time-point between cultivars “Valor” and “BP1.”
Table S4. Common DE genes present in both “Valor” and “BP1” at each time-point compared to mock-inoculated samples.
Table S5. Cultivar-specific differentially expressed genes.
Table S6. Cultivar-specific DEGs overrepresented in various Gene Ontology biological processes.
Table S7. Differentially expressed candidate novel CDS transcripts in the time-course.
Table S8. Domains assigned to novel CDS candidates using InterProScan5 software tool.
Table S9. RT-qPCR primers used to validate RNA-seq data.
Table S10. RT-PCR primers used for novel CDS candidate transcripts validation.