Browsing Genetics by Author "Saltykova, Assia"

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Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:-

Saltykova, Assia; Wuyts, Veronique; Mattheus, Wesley; Bertrand, Sophie; Roosens, Nancy H.C.; Marchal, Kathleen; De Keersmaecker, Sigrid C.J. (Public Library of Science, 2018-02-06)

Whole genome sequencing represents a promising new technology for subtyping of bacterial pathogens. Besides the technological advances which have pushed the approach forward, the last years have been marked by considerable ...
A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

Buytaers, Florence E.; Saltykova, Assia; Denayer, Sarah; Verhaegen, Bavo; Vanneste, Kevin; Roosens, Nancy H.C.; Pierard, Denis; Marchal, Kathleen; De Keersmaecker, Sigrid C.J. (MDPI, 2020-08-05)

The management of a foodborne outbreak depends on the rapid and accurate identification of the responsible food source. Conventional methods based on isolation of the pathogen from the food matrix and target-specific ...
Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study

Saltykova, Assia; Buytaers, Florence E.; Denayer, Sarah; Verhaegen, Bavo; Pierard, Denis; Roosens, Nancy H.C.; Marchal, Kathleen; De Keersmaecker, Sigrid C.J. (MDPI Publishing, 2020-08-08)

Culture-independent diagnostics, such as metagenomic shotgun sequencing of food samples, could not only reduce the turnaround time of samples in an outbreak investigation, but also allow the detection of multi-species ...

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Browsing Genetics by Author "Saltykova, Assia"

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