Browsing by UP Author "Palmer, Marike"

Browsing by UP Author "Palmer, Marike"

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  • Steenkamp, Emma Theodora; Van Zyl, E.; Beukes, Chrizelle Winsie; Avontuur, Juanita R.; Chan, Wai Yin; Palmer, Marike; Mthombeni, Lunghile S.; Phalane, Francina Lebogang; Sereme, T. Karabo; Venter, S.N. (Stephanus Nicolaas) (Elsevier, 2015-12)
    Despite the diversity of Burkholderia species known to nodulate legumes in introduced and native regions, relatively few taxa have been formally described. For example, the Cape Floristic Region of South Africa is thought ...
  • Palmer, Marike; De Maayer, Pieter; Poulsen, Michael; Steenkamp, Emma Theodora; Van Zyl, Elritha; Coutinho, Teresa A.; Venter, S.N. (Stephanus Nicolaas) (BioMed Central, 2016-03-01)
    The genus Pantoea incorporates many economically and clinically important species. The plant-associated species, Pantoea agglomerans and Pantoea vagans, are closely related and are often isolated from similar environmen ...
  • Beukes, Chrizelle Winsie; Palmer, Marike; Manyaka, Puseletso; Chan, Wai Yin; Avontuur, Juanita R.; Van Zyl, Elritha; Venter, S.N. (Stephanus Nicolaas); Steenkamp, Emma Theodora; Clum, Alicia; Pillay, Manoj; Reddy, T.B.K.; Daum, Chris; Shapiro, Nicole; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos; Woyke, Tanja; Blom, Jochem; Whitman, William B. (Frontiers Research Foundation, 2017-06)
    Although the taxonomy of Burkholderia has been extensively scrutinized, significant uncertainty remains regarding the generic boundaries and composition of this large and heterogeneous taxon. Here we used the amino acid ...
  • Palmer, Marike; Steenkamp, Emma Theodora; Coetzee, Martin Petrus Albertus; Blom, Jochen; Venter, S.N. (Stephanus Nicolaas) (Frontiers Media, 2018-02-06)
    Bacteriologists have strived toward attaining a natural classification system based on evolutionary relationships for nearly 100 years. In the early twentieth century it was accepted that a phylogeny-based system would ...
  • Avontuur, Juanita R.; Palmer, Marike; Beukes, Chrizelle Winsie; Chan, Wai Yin; Coetzee, Martin Petrus Albertus; Blom, Jochen; Stępkowski, Tomasz; Kyrpides, Nikos C.; Woyke, Tanja; Shapiro, Nicole; Whitman, William B.; Venter, S.N. (Stephanus Nicolaas); Steenkamp, Emma Theodora (Elsevier, 2019-07)
    Bradyrhizobium is thought to be the largest and most diverse rhizobial genus, but this is not reflected in the number of described species. Although it was one of the first rhizobial genera recognised, its taxonomy remains ...
  • Palmer, Marike; Steenkamp, Emma Theodora; Coetzee, Martin Petrus Albertus; Avontuur, Juanita R.; Chan, Wai Yin; Van Zyl, Elritha; Blom, Jochen; Venter, S.N. (Stephanus Nicolaas) (Microbiology Society, 2018-04)
    The Erwiniaceae contain many species of agricultural and clinical importance. Although relationships among most of the genera in this family are relatively well resolved, the phylogenetic placement of several taxa remains ...
  • Beukes, Chrizelle Winsie; Steenkamp, Emma Theodora; Van Zyl, Elritha; Avontuur, Juanita R.; Chan, Wai Yin; Hassen, Ahmed Idris; Palmer, Marike; Mthombeni, Lunghile S.; Phalane, Francina L.; Sereme, T. Karabo; Venter, S.N. (Stephanus Nicolaas) (Springer, 2019-09)
    Please read abstract in the article.
  • Palmer, Marike; Steenkamp, Emma Theodora; Coetzee, Martin Petrus Albertus; Chan, Wai Yin; Van Zyl, Elritha; De Maayer, Pieter; Coutinho, Teresa A.; Blom, Jochen; Smits, Theo H. M.; Duffy, Brion; Venter, S.N. (Stephanus Nicolaas) (Springer, 2017-10)
    Investigation of the evolutionary relationships between related bacterial species and genera with a variety of lifestyles have gained popularity in recent years. For analysing the evolution of specific traits, however, a ...
  • Venter, S.N. (Stephanus Nicolaas); Palmer, Marike; Beukes, Chrizelle Winsie; Chan, Wai Yin; Shin, Giyoon; Van Zyl, Elritha; Seale, Tarren; Coutinho, Teresa A.; Steenkamp, Emma Theodora (Springer, 2017-10)
    Bacterial species are commonly defined by applying a set of predetermined criteria, including DNA–DNA hybridization values, 16S rRNA gene sequence similarity, phenotypic data as well as genome-based criteria such as average ...
  • Palmer, Marike; Venter, S.N. (Stephanus Nicolaas); Coetzee, Martin Petrus Albertus; Steenkamp, Emma Theodora (Elsevier, 2019-03)
    Many gene flow barriers associated with genetic isolation during eukaryotic species divergence, are lacking in prokaryotes. In these organisms the processes associated with horizontal gene transfer (HGT) may provide both ...
  • Estrada-de los Santos, Paulina; Palmer, Marike; Steenkamp, Emma Theodora; Maluk, Marta; Beukes, Chrizelle Winsie; Hirsch, Ann M.; James, Euan K.; Venter, S.N. (Stephanus Nicolaas) (Springer, 2019-06)
    “Burkholderia dabaoshanensis” was described in 2012. Although the name was effectively published, it could not be validly published, because the description provided in the original paper did not comply with the Rule 27 ...