Abstract:
The mathematical interpretation of interventions for the mitigation of epidemics in the literature
often involves finding the optimal time to initiate an intervention and/or the use of the
number of infections to manage impact. Whilst these methods may work in theory, in order
to implement effectively they may require information which is not likely to be available in the
midst of an epidemic, or they may require impeccable data about infection levels in the community.
In reality, testing and cases data can only be as good as the policy of implementation
and the compliance of the individuals, which implies that accurately estimating the levels of
infections becomes difficult or complicated from the data that is provided. In this paper, we
demonstrate a different approach to the mathematical modelling of interventions, not based
on optimality or cases, but based on demand and capacity of hospitals who have to deal
with the epidemic on a day to day basis. In particular, we use data-driven modelling to calibrate
a susceptible-exposed-infectious-recovered-died type model to infer parameters that
depict the dynamics of the epidemic in several regions of the UK. We use the calibrated
parameters for forecasting scenarios and understand, given a maximum capacity of hospital
healthcare services, how the timing of interventions, severity of interventions, and conditions
for the releasing of interventions affect the overall epidemic-picture. We provide an optimisation
method to capture when, in terms of healthcare demand, an intervention should be put
into place given a maximum capacity on the service. By using an equivalent agent-based
approach, we demonstrate uncertainty quantification on the likelihood that capacity is not
breached, by how much if it does, and the limit on demand that almost guarantees capacity
is not breached.
Description:
DATA AVAILABILITY STATEMENT : The datasets and
code supporting the conclusions of this article are
available in the following repository, DOI: 10.5281/
zenodo.7726492. The datasets used in this
manuscript are alternatively publicly available on
the Coronavirus Dashboard website and the ONS
website. A detailed description of the data, how to
download it and where to download it from can be
found here: https://github.com/jvanyperen/
exploring-interventions-manuscript/blob/v1.0/
parameter_estimation/data_management/data_
sources.md.
SUPPORTING INFORMATION : APPENDIX S1. Supplementary material containing the parameter estimation approach, information about data, further figures and the verification of parameters for the length of stay approach.