dc.contributor.advisor |
Slabbert, Cara |
|
dc.contributor.coadvisor |
Wooding, Madelien |
|
dc.contributor.coadvisor |
Malan, F.P. (Frederick) |
|
dc.contributor.postgraduate |
Mudau, Mbavhalelo Wendy |
|
dc.date.accessioned |
2024-06-19T14:09:42Z |
|
dc.date.available |
2024-06-19T14:09:42Z |
|
dc.date.created |
2024-09-06 |
|
dc.date.issued |
2024-04-12 |
|
dc.description |
Dissertation (MSc (Chemistry))--University of Pretoria, 2024. |
en_US |
dc.description.abstract |
The primary objective of this study was to identify and characterise SCBs in herbal mixtures from
South Africa using a serial identification approach. The analysis of seised herbal mixtures was carried
out using ultra-performance liquid chromatography coupled with a high-resolution mass
spectrometer (UPLC-HRMS) and gas chromatography coupled with amass selective detector (GCMSD).
The study identified three SCBs associated with fatalities: N-[[1-[(4-fluorophenyl)methyl]-1Hindazol-
3-yl]carbonyl]-L-valine, methyl ester (AMB-FUBINACA), N-[[1-(5-fluoropentyl)-1H-indazol-3-
yl]carbonyl]-3-methyl-D/L-valine, methyl ester (5F-ADB), N-[[1-(5-fluoropentyl)-1H-indazol-3-
yl]carbonyl]-3-methyl-L-valine, ethyl ester (5F-EDMB-PINACA) and fifteen other non-SCBs
compounds. The study of MS fragment ions predicted possible fragmentation pathways and found
that the identified SCBs and analysed reference standards are susceptible to the amide linker group
cleavage, followed by cleavage of the fluorinated side chain. These findings suggest that abundant
iv
fragment ions can be used to screen uncharacterised SCBs belonging to the same family or sharing
similar pharmacores.
Additionally, we validated isolated SCBs from herbal mixtures using NMR spectroscopy where a
reference standard was not available and obtained crystal data using SC-XRD. 1H-NMR and 13C-NMR
spectral fingerprinting allowed for cross-validation of the isolated 5F-ADB. 1H-NMR spectroscopy was
also successfully used to cross-validate the reference standard (S)-5F-EMBICA, supplied as (S)-5FABICA.
SC-XRD crystal data results of (S)-5F-EMBICA were obtained with low quality and hence crossvalidated
by NMR spectroscopy. This research, for the first time, to our knowledge reports the 1HNMR
spectroscopy data of (S)-5F-EMBICA and its crystal structure and crystallography data.
Finally, we conducted in silico analysis to estimate the pharmacokinetics and physicochemical
properties of the SCB compounds. We utilised the SwissADME web tool for this purpose, which
revealed several key findings, including the lipophilicity enantiomeric discrimination, side chain
fluorogroup type effects, hydrophobic nature, TPSA analysis, GI absorption levels and BBB
permeation, P-gp binding, and probability for CYP3A4 inhibition. These findings suggest that the
SwissADME web tool can be used as a first line of pharmacokinetic properties prediction for SCBs in
the absence of bioassays and expertise in advanced computer modelling. In silico analysis was also
carried out to characterise selected SCBs further through docking pose predictions on the CB1
receptor using the Maestro molecular modelling software by Schrödinger. The results showed that
the indazole ring of the SCB interacts via π-π stacking with phenylalanine residues, particularly Phe
268, Phe 170, Phe 174, and His 178. The study concludes that the (S)-enantiomer has a higher CB1
affinity and more π-π stacking interactions with phenylalanine residues which are important for CB1
agonism. These results can be used to predict the properties of uncharacterised SCBs before their
spread in the illicit drug market. |
en_US |
dc.description.availability |
Unrestricted |
en_US |
dc.description.degree |
MSc (Chemistry) |
en_US |
dc.description.department |
Chemistry |
en_US |
dc.description.faculty |
Faculty of Natural and Agricultural Sciences |
en_US |
dc.description.sdg |
SDG-03: Good health and well-being |
en_US |
dc.description.sponsorship |
National Research Foundation |
en_US |
dc.identifier.citation |
* |
en_US |
dc.identifier.doi |
10.25403/UPresearchdata.26057779 |
en_US |
dc.identifier.other |
S2024 |
en_US |
dc.identifier.uri |
http://hdl.handle.net/2263/96550 |
|
dc.identifier.uri |
DOI: https://doi.org/10.25403/UPresearchdata.26057779.v1 |
|
dc.language.iso |
en |
en_US |
dc.publisher |
University of Pretoria |
|
dc.rights |
© 2023 University of Pretoria. All rights reserved. The copyright in this work vests in the University of Pretoria. No part of this work may be reproduced or transmitted in any form or by any means, without the prior written permission of the University of Pretoria. |
|
dc.subject |
UCTD |
en_US |
dc.subject |
Sustainable Development Goals (SDGs) |
en_US |
dc.subject |
UPLC-HRMS |
en_US |
dc.subject |
Synthetic Cannabinoids |
|
dc.subject |
Crystallography |
|
dc.subject |
Gas chromatography coupled with amass selective detector (GCMSD) |
|
dc.subject |
Serial identification |
|
dc.subject |
Herbal mixtures |
|
dc.subject.other |
SDG-03: Good health and well-being |
|
dc.subject.other |
Natural and agricultural sciences theses SDG-03 |
|
dc.title |
Serial identification and structural analysis of synthetic cannabinoids found in herbal mixtures in South Africa |
en_US |
dc.type |
Dissertation |
en_US |